SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28107

Length: 1225 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene28107 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	formyltetrahydrofolate deformylase, putative [Brassica oleracea]	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	formyltetrahydrofolate deformylase	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	tetrahydrofolate metabolic process	GO:0046653	Biological Process	82%
Blast2go	photorespiration	GO:0009853	Biological Process	82%
Blast2go	mitochondrion	GO:0005739	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Formyl transferase, N-terminal	IPR002376	-	0.0	-
Sma3	Formyltetrahydrofolate deformylase	IPR004810	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRL4

Fln msg:

Fln protein: MAMKKFLGNRKNERLIRHYLPSFASAVGSPSLSNTSPPQLIRSYRSWKVVGEETAIQSTDSSLFNGVHVFQCPDQTGIMAKLTECIASRGGNILSGDVFVSRQKQVFYSRNEFAYDPSQWPREVMEEDFMKLAKMFNARKSIVRVPEIDPKFKIAVLASRQDHCLVDLLHGWQEKKFPVEIMRVISNHNREPNTHIIRFLERHGIPYHYLPTGNENKREEEILNLVGDTDFLVLARYMQILSSKFLESYGKDVINIHHGLLPSFKGGNPFRQAFDVGVKLIGATSHFVTEELDGGPIIEQMVEHITHRDTLLSFANKSENLEKQCLAKAIKYYCELRVLRFDDSKTIVFD*

Protein Length: 352

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTCCCCAGCTCCAACGAACCAGTACAATCGAAAGATCACGAAGGGGAGGATGTGGAAGCAGTGGGCTATCCTTGAATCCGTCACCCAATGCAGAATATAATTGAGATCATTGAAG_-_ATGGCGATGAAGAAATTTTTGGGAAATCGGAAGAATGAGAGATTAATAAGACACTACTTACCTTCATTTGCATCTGCAGTGGGATCCCCCTCCCTGTCAAACACAAGCCCGCCACAGTTAATTCGTTCGTATCGTTCATGGAAGGTTGTGGGAGAAGAAACAGCCATACAATCCACAGATTCCAGCCTCTTCAATGGCGTGCATGTTTTTCAGTGTCCTGATCAGACAGGGATAATGGCGAAACTGACTGAATGCATAGCGTCTCGTGGCGGGAATATCCTCAGCGGTGACGTTTTTGTCAGCAGACAGAAACAGGTCTTCTACTCCCGGAATGAGTTTGCCTATGATCCTTCGCAGTGGCCACGGGAAGTCATGGAGGAGGATTTCATGAAACTGGCAAAGATGTTCAATGCACGGAAATCAATTGTGAGAGTGCCAGAGATAGATCCCAAATTCAAGATTGCTGTCCTGGCTTCACGACAGGACCATTGCTTGGTCGATTTACTGCATGGATGGCAGGAAAAAAAATTTCCTGTTGAAATTATGCGTGTAATAAGTAACCACAACAGAGAGCCAAACACCCATATTATCCGGTTTCTTGAACGACACGGCATTCCCTACCATTATTTGCCAACTGGCAATGAAAATAAAAGAGAGGAGGAGATCTTGAACTTGGTTGGTGACACAGACTTCTTGGTTCTAGCTCGATATATGCAGATCCTGTCCAGCAAGTTTTTGGAAAGTTATGGAAAAGATGTTATAAATATTCATCATGGGCTCCTGCCATCTTTCAAGGGAGGGAACCCTTTTAGGCAGGCTTTTGATGTTGGAGTAAAATTGATTGGTGCAACAAGCCACTTTGTAACAGAAGAACTAGATGGTGGGCCCATAATTGAGCAAATGGTTGAACACATTACTCACCGGGATACCTTGTTATCGTTTGCGAACAAATCTGAGAACCTCGAAAAACAATGCCTAGCCAAAGCAATTAAATATTACTGTGAACTTCGTGTTTTAAGGTTTGACGACAGTAAAACAATCGTGTTTGATTAA___TCCAAGCATTTAACGTTTGCTCATCTATGGTAA

Fln Alignment:

Contig28107___MAMKKFLGNRKNERLIRHYLPSFASAVGSPSLSNTSPPQLIRSYRSWKVVGEETAIQSTDSSLFNGVHVFQCPDQTGIMAKLTECIASRGGNILSGDVFVSRQKQVFYSRNEFAYDPSQWPREVMEEDFMKLAKMFNARKSIVRVPEIDPKFKIAVLASRQDHCLVDLLHGWQEKKFPVEIMRVISNHNREPNTHIIRFLERHGIPYHYLPTGNENKREEEILNLVGDTDFLVLARYMQILSSKFLESYGKDVINIHHGLLPSFKGGNPFRQAFDVGVKLIGATSHFVTEELDGGPIIEQMVEHITHRDTLLSFANKSENLEKQCLAKAIKYYCELRVLRFDDSKTIVFD
B8LRL4_______________MVMKKFLGNRKNERLIRHYLPAFAYAVGSSTLSNTSPPQLLRSYRSWKVVGEETDTQSTASTLFNGLHVFQCPDQTGIMAKLTECIASRGGNILSGDVFVSRQKQVFYSRNEFVYDPLQWPRAVMEEDFLDLAKMFNAPKSIVRVPEIDPKFKIAVLVSRQEHCLVDLLHGWQEGKIPVEITRVISNHNREPNTHIIRFLERHGIPYHYLPTSNENKREEEILNLVGDTDFLVLARYMQILSRKFLESYEKDIINIHHGLLPSFKGGNPFRQAFDVGVKLIGATSHFITEELDGGPIIEQMVERITHRDTLLSFANKSENLEKQCLTKAIKYYCELRILRFDDSKTIVFD

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
710			16	83	0.999991
888		87		12	0.992554
889			87	12	0.992554
962		80		20	0.995493
966			20	80	0.995493
968	80		20		0.995493
971	20			80	0.995493
973		20		80	0.995493
974		20	60		0.99255
975	20		80		0.995493
976	20	20		60	0.99255
979			80	20	0.995493
981	20			80	0.995493
982		20		80	0.995493
984		25		75	0.996473
1106			25	75	0.996473
1107	75			25	0.996473
1108			25	75	0.996473
1109	33			66	0.997452
1111	33			66	0.997452
1115		33		66	0.997452
1116	33			66	0.997452
1117	33		66		0.997452
1121		33	66		0.997452
1127		33		66	0.997452
1128			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain