SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28043

Length: 1002 nt

Origin of reads: Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene28043

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Neutral amino acid transport protein n=1 Tax=Populus trichocarpa RepID=B9GLG7_POPTR	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	neutral amino acid transport protein	-	-	81%

Source	InterPros	Term	Type	Identity
Sma3	Adenosylhomocysteinase	IPR000043	-	-
Sma3	Amino acid/polyamine transporter I	IPR002293	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Amino acid permease domain	IPR004841	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVV3

Fln msg: Distance to subject end: 162 aas, your sequence is shorter than subject: 325 - 487

Fln protein: MGGSSNDDEDQEHENIEARGQRIESRSGSKSKKLKLIPLIFLIYFEVSGGPFGEEPAVKAAGPLLAIVGFLVFPFIWSIPEALVTAELATAYPGNGGYVVWAGKAFGPFWGFLMGWWKWISGVINNAAYPVLCFDYLTVLLPACGHGRVRDVGILLYTLLLSYLNFTGLSIVGWTAVVLGTVSLLPFILMALISIRRIKPSRWKEGPKGHMDRSLYFNTLFWNLNFWDNASTLAGEVEDPQRTFPRALFFAGILTVLGYVLPLLAVTGALELDRELWGDGYLAKAAGLIAGAWLKYWVEIGAVLSTVGLFEAQLSSASFQLLGMA

Protein Length: 326

Fln nts: ATTTCCCGTCGGCAAAACAAGATTTGG_-_ATGGGTGGGTCTTCGAATGATGATGAAGATCAAGAACATGAAAACATTGAAGCCCGTGGTCAGCGGATCGAATCTCGTTCGGGCTCGAAATCTAAGAAGCTGAAGCTCATCCCGCTGATATTTCTGATATACTTCGAAGTCTCAGGAGGACCGTTTGGTGAAGAGCCGGCGGTGAAAGCGGCCGGTCCGCTGCTGGCCATAGTGGGGTTCCTCGTTTTCCCGTTCATATGGAGCATCCCGGAAGCCCTAGTGACGGCGGAGCTGGCCACGGCGTACCCGGGCAACGGCGGCTACGTGGTCTGGGCGGGAAAGGCCTTCGGGCCATTTTGGGGATTCCTCATGGGATGGTGGAAGTGGATCAGTGGCGTCATCAACAATGCCGCCTACCCAGTTCTCTGCTTCGATTACCTCACGGTACTCCTGCCGGCCTGTGGCCACGGTCGGGTCAGAGACGTGGGGATTCTTCTTTACACGCTTCTCCTGAGCTATCTGAACTTCACGGGGCTCTCCATTGTGGGCTGGACAGCTGTCGTGCTGGGGACGGTATCGTTGCTCCCGTTCATCCTCATGGCCCTGATTTCGATTCGCCGGATTAAGCCCTCGCGCTGGAAAGAGGGCCCCAAGGGTCACATGGACCGGTCCTTATATTTCAATACGCTGTTCTGGAACTTGAATTTTTGGGACAATGCAAGTACTCTGGCTGGGGAGGTCGAGGATCCGCAGCGGACTTTTCCCCGGGCGTTGTTCTTTGCTGGGATATTGACCGTCTTGGGTTACGTTTTGCCGTTACTTGCTGTCACCGGAGCGCTGGAGCTGGACCGGGAGCTATGGGGCGATGGCTACCTAGCCAAAGCCGCGGGGCTGATTGCTGGCGCGTGGCTCAAGTACTGGGTCGAAATCGGCGCTGTGTTGTCCACCGTGGGGCTCTTCGAGGCCCAGCTGAGCAGCGCTTCGTTCCAGTTGCTAGGCATGGCG

Fln Alignment:

Contig28043___MGGSSNDDEDQEHENIEARGQRIEXXXXXXXXXXXXXXXXXXXYFEVSGGPFGEEPAVKAAGPLLAIVGFLVFPFIWSIPEALVTAELATAYPGNGGYVVWAGKAFGPFWGFLMGWWKWISGVINNAAYPVLCFDYLTVLLPACGHGRVRDVGIXXXXXXXXXXNFTGLSIVGWTAVVLGTVSLLPFILMALISIRRIKPSRWKEGPKGHMDRSLYFNTLFWNLNFWDNASTLAGEVEDPQRTFPRALFFAGILTVLGYVLPLLAVTGALELDRELWGDGYLAKAAGLIAGAWLKYWVEIGAVLSTVGLFEAQLSSASFQLLGMA
A9NVV3_______________MGGSSNDDEDQEHENVGAGGQRIESRSGSKSKKLKLIPLIFLIYFEVSGGPFGEETAVKAAGPLLAIAGFLIFPFVWSIPEALVTAELATAYPGNGGYVVWAGTAFGPFWGFLMGWWKWIGGVINNAAYPVLCFDYLKLLLPACGHGPVRDVGILLYTFLLSYLNFTGLSIVGWTAAILGTLSLLPFVLMALISIPRIKPSRWVVADQGHMDWSLYFNTLFWNLNFWDNASTLAGEVEEPQRTFPRALLCAGVLTVLGYVLPLLAATGALELDRELWSDGYLADAAGLIAGAWLKYWVEIGAVLSTVGLFEAQLSSASFQLLGMA

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
513		80		20	0.995493
515	80			20	0.995493
517		80		20	0.995493
675		25		75	0.996473
718	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain