SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28018

Length: 1011 nt

Origin of reads: Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene28018 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	dual specificity protein phosphatase family protein [Arabidopsis thaliana] dbj\|BAD18373.1\| PROPYZAMIDE-HTPERSENSITIVE 1 [Arabidopsis thaliana] gb\|AED93202.1\| dual specificity protein phosphatase family protein [Arabidopsis thaliana]	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	75%
Blast2go	dual specificity protein phosphatase family protein	-	-	64%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphorylase.	EC:2.4.1.1	-	0.0	64%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	64%
Blast2go	Phosphoprotein phosphatase.	EC:3.1.3.16	-	0.0	64%

Source	GOs	Term	Type	Identity
Blast2go	FAD metabolic process	GO:0046443	Biological Process	64%
Blast2go	response to water deprivation	GO:0009414	Biological Process	64%
Blast2go	regulation of gene expression	GO:0010468	Biological Process	64%
Blast2go	response to temperature stimulus	GO:0009266	Biological Process	64%
Blast2go	regulation of stomatal movement	GO:0010119	Biological Process	64%
Blast2go	chloroplast organization	GO:0009658	Biological Process	64%
Blast2go	cortical microtubule organization	GO:0043622	Biological Process	64%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	64%
Blast2go	synapsis	GO:0007129	Biological Process	64%
Blast2go	response to high light intensity	GO:0009644	Biological Process	64%
Blast2go	protein binding	GO:0005515	Molecular Function	64%
Blast2go	phosphorylase activity	GO:0004645	Molecular Function	64%
Blast2go	phosphoprotein phosphatase activity	GO:0004721	Molecular Function	64%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	64%

Source	InterPros	Term	Type	Identity
Sma3	Dual specificity phosphatase, catalytic domain	IPR000340	-	-
Sma3	Protein-tyrosine/Dual-specificity phosphatase	IPR000387	-	-
Sma3	Actin-fragmin kinase, catalytic domain	IPR015275	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	Protein-tyrosine phosphatase, active site	IPR016130	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6GT39

Fln msg: Separated hits, possible frame ERROR between 155 and 227, Distance to subject end: 400 aas, your sequence is shorter than subject: 336 - 931

Fln protein: EWPLNLERLGYEFAKRFGVQTPQARVIHNSSAEWQSIKDAAEKARNMASAxxxxxxxxxxxxxxxxxxxxxxxxxMGYVHGCPWLDSSFAFNTQEAAQKTAAALGKLLVLDLVVRNEDRLPCRQLGWRGNPENLLFTEKLPFINVDVSLHEKAEIMPRRNRGIAVSHRERRFNSVDSRSGFDKISLVSHNSDTSDWYGSARDIHAVECGALKIDMSDFYVVAIDSGVPRRPPAGKRLSDQLQYPKLVELLLNSTEFSSNLLYEISGERLGFQNLGETAGNLDSCSLESVDQAKVVQEFRAGFRGALREMQSLHVFLLKFHQKLDALLRTFVSIISK

Protein Length: 337

Fln nts: AAGAATGGCCACTCAATCTTGAGCGTTTGGGCTATGAATTTGCTAAACGTTTTGGAGTCCAAACACCTCAAGCTAGAGTTATTCATAATTCCAGTGCTGAGTGGCAGAGTATCAAGGATGCTGCTGAGAAAGCAAGAAATATGGCAAGTGCAGAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTATGGGGTATGTACATGGTTGCCCATGGTTGGACAGTTCATTTGCATTTAATACTCAAGAAGCTGCTCAAAAGACTGCTGCAGCTCTTGGCAAGCTATTGGTTCTAGATTTAGTTGTCCGAAATGAAGACCGCCTGCCTTGTCGTCAGCTTGGATGGCGTGGGAATCCGGAAAATCTTTTATTTACAGAAAAACTTCCATTTATAAATGTGGATGTCTCATTACATGAAAAAGCTGAAATTATGCCTCGAAGAAACAGAGGAATTGCAGTTTCTCATAGGGAAAGGAGATTTAACTCAGTGGACAGCAGGTCTGGTTTTGATAAAATAAGTCTTGTTTCACACAATTCTGACACATCTGATTGGTATGGTTCTGCGAGGGATATTCATGCAGTAGAGTGTGGGGCATTGAAAATTGATATGAGTGACTTTTATGTTGTGGCAATTGATTCTGGAGTTCCACGCCGGCCTCCTGCTGGAAAAAGGTTGTCTGATCAATTGCAATATCCAAAGCTGGTGGAGCTTCTTCTAAATAGTACTGAATTTTCATCAAATTTGCTTTATGAAATATCTGGGGAGAGACTTGGCTTTCAAAATTTAGGTGAAACTGCAGGGAATTTAGATTCTTGTTCTTTGGAAAGTGTTGACCAAGCAAAAGTTGTTCAGGAGTTCCGAGCTGGTTTTCGTGGTGCTCTGAGGGAAATGCAAAGCTTACATGTTTTCTTACTAAAATTTCACCAGAAGTTGGATGCATTACTGAGAACATTTGTGTCAATTATAAGCAAAAT

Fln Alignment:

Contig28018___ERLGYEFAKRFGVQTPQARVIHNSSAEWQSIKDAAEKARNMASAExxxxxxxxxxxxxxxxxxxxxxxxMGYVHGCPWLDSSFAFNTQEAAQKTAAALGKLLVLDLVVRNEDRLPCRQLGWRGNPENLLFTEKLPFINVDVSLHE--KAEIMPRRNRGIAVSHRERRFNSVDSRSGFDKISLVSHNSDTSDWYGSARDIH-AVECGAL-KIDMSDFYVVAIDSGVPRRPPAGKRLSDQLQYPKLVELLLNSTEFSSNLLYEISGERLGF-QNLGETAGNLDSCSLESVDQAKVVQEFRAGFRGALREMQSLHVFLLKFHQKLDALLRTFVSIISK
F6GT39_______________ERLGYEFAKWLGVRTPQARVIHNSSTEWLQIKEAAEKARDAAISExxxxxxxxxxxxxxxxxxxxxxxxMNYVHGSPLLESSSAFDSREAAEKTAAALGRVLMLDLVIRNEDRLPCRQLRWRGNPANLLLADKMASTDMD-ALEEAFDSAIKRYRPRVIRALQKERRATSVDSRLSPHNSGLVSQSSDLSDAIGSPSSSNTSLEGQALNQSGLSDFHIVAIDSGVPRRPPAGKRANDQANYPKLVELMLNSSKYSLNLLHEITGGKLGFASDDTETA-----TDILLTEMASVVHEFRRGFRAALRDLQGFHIFLLTLHQKLDGLLRVFLNIVNR

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
424		83	16		0.994512
425		83		16	0.994512
499	16			83	0.994512
502		83		16	0.994512
629	16	83			0.994512
630			83	16	0.994512
631		83	16		0.994512
632		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain