SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene27968

Length: 816 nt

Origin of reads: Biogeco2 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene27968 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	protein	-	-	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	69%

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	Glutaredoxin	IPR002109	-	-
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	Glutaredoxin active site	IPR011767	-	-
Sma3		IPR012335	-	-
Sma3		IPR013753	-	-
Sma3	Flagellar basal body rod protein, conserved site	IPR019776	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P1Z7

Fln msg: Distance to subject end: 105 aas, W1: There is no M at the beginning, your sequence is shorter than subject: 257 - 365

Fln protein: LQSTHKTISSDVWGPISFGFVIKHSRSAANPQSHTHSGTSRNWFESRSLATATRGISTSGVEHHKRLLFVRAKEEGSQGGPGREELQLPQNETDDTNAEVNMANQGKGSNSVLSFLCPLLKFVGGGDPSLARNDIFEITTSGLASIARLPWGSQTLPTAAAVREEKGKPQACPFCRRVREALTELDLSAEVYPCPKGSLKHREIVRRYGGKEQFPYLIDPNTGVSLYESGDIVKYLFQQYGNGNDPSPGLLESTLFT

Protein Length: 258

Fln nts: ATGGGAATGATGATCATTTCTCAACGAAGCCTGTTGTACGTAATTGCAGAGCACACACAAAACTATCAGCAGCGATGTCTGGGGGCCCATTTCCTTTGGTTTCGTGATTAAACACTCACGTAGTGCCGCTAACCCGCAGAGTCACACGCACTCTGGAACTTCAAGAAATTGGTTCGAATCCCGTTCGCTTGCAACTGCGACTCGTGGGATTTCGACAAGCGGAGTTGAGCATCATAAGAGGCTGTTGTTTGTCAGGGCGAAAGAAGAAGGATCACAGGGCGGACCAGGCAGAGAGGAGCTACAACTCCCTCAAAATGAAACAGACGACACTAATGCAGAAGTAAACATGGCCAACCAAGGCAAAGGCAGCAACAGTGTCTTGTCTTTCCTCTGTCCATTGCTCAAGTTTGTGGGGGGTGGAGATCCATCCTTAGCTCGCAATGATATTTTTGAGATTACAACCTCTGGTCTTGCAAGTATTGCAAGACTACCATGGGGTTCACAAACTTTACCCACTGCTGCAGCCGTGCGAGAGGAAAAAGGGAAGCCACAGGCATGCCCTTTTTGCAGGCGAGTGAGAGAAGCTCTGACTGAATTGGATCTTTCTGCAGAAGTCTACCCTTGTCCCAAAGGCTCTTTAAAGCACCGAGAGATTGTTAGAAGATATGGTGGCAAGGAACAGTTCCCTTATCTCATTGATCCAAACACTGGTGTTTCTTTATATGAAAGCGGTGATATAGTGAAATATTTATTCCAACAATATGGGAATGGTAATGACCCTTCTCCAGGTCTCTTGGAAAGCACTTTGTTCACTGG

Fln Alignment:

Contig27968___PISFGFVIKHSRSAANPQSHTHSGTSRNWFESRSLATATRGISTSGVEHHKRLLFVRAKEEGSQGGPGREELQL---PQNETDDTNAEVNMANQGKGSNSVLSFLCPLLKFVGGGDPSLARNDIFEITTSGLASIARLPWGSQTLPTAAAVREEKGKP---------QACPFCRRVREALTELDLSAEVYPCPKGSLKHREIVRRYGGKEQFPYLIDPNTGVSLYESGDIVKYLFQQYGNGNDPSPGLLESTLFT
A9P1Z7_______________PISFSILIKHSRCAANPQGHTHSGTSRNWLGSLSHATATRGLSTGGVENHKRLLSVRAKAEGSHGGPDREELQLQQRPQIEADDTTADVNMVNQGKGSSNVLSFLCPLLKFMGGVDPSLARNDIFEITTSGIATIARLPWGSQTLTTAAAMREEKGQPLKTLQLYEFEACPFCRRVREALTELDLSAEVYPCPKGSLKHRAIVRRYGGKEQFPYLMDPNTGVSLYESGDIVKYLFQEYGNGNNPSRGLLESTLFT

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
634		90		10	0.90298
635			90	10	0.90298
680	12		87		0.992554
682	12		87		0.992554
683			87	12	0.992554
684			87	12	0.992554
712		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain