SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene27960

Length: 960 nt

Origin of reads: Biogeco1 v2 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene27960 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Low-phosphate root 1 n=6 Tax=Arabidopsis RepID=A5X8Y8_ARATH	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	multi-copper oxidase type i family protein	-	-	71%

Source	ECs	Term	Type	e value	Identity
Blast2go	Oxidoreductases, Acting on diphenols and related substances as donors, With oxygen as acceptor.	EC:1.10.3.-	-	0.0	71%

Source	KEGGs	Term	Identity
Blast2go	Betalain biosynthesis	00965	71%
Blast2go	Metabolic pathways	01100	71%
Blast2go	Biosynthesis of secondary metabolites	01110	71%

Source	GOs	Term	Type	Identity
Blast2go	root development	GO:0048364	Biological Process	71%
Blast2go	auxin polar transport	GO:0009926	Biological Process	71%
Blast2go	photomorphogenesis	GO:0009640	Biological Process	71%
Blast2go	meristem maintenance	GO:0010073	Biological Process	71%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	71%
Blast2go	indeterminate inflorescence morphogenesis	GO:0048283	Biological Process	71%
Blast2go	cellular response to phosphate starvation	GO:0016036	Biological Process	71%
Blast2go	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor	GO:0016682	Molecular Function	71%
Blast2go	cell wall	GO:0005618	Cellular Component	71%
Blast2go	membrane	GO:0016020	Cellular Component	71%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	71%
Blast2go	response to karrikin	GO:0080167	Biological Process	71%

Source	InterPros	Term	Type	Identity
Sma3	Multicopper oxidase, type 1	IPR001117	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Uncharacterised domain XH	IPR005379	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	Multicopper oxidase, type 2	IPR011706	-	-
Sma3	Multicopper oxidase, type 3	IPR011707	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRY9

Fln msg: Separated hits, possible frame ERROR between 185 and 205, Distance to subject end: 41 aas, your sequence is shorter than subject: 320 - 583

Fln protein: GLPSGPEYDRNLIVFDRSFATDGSIYMNSTGNNPSIHPQWQPEYFGNAIIVNGKAWPYMKxxxxxxxxFRIVNASNARFYRFALSNGLSVTFVGSDSAYLPAPVSVKEFLLAPSEIADIVVDFNDSATEEATLTNDAPYPYPSGDPVDNLNSKVMKFLIETPPDAASSAENRSSSRIPEKLVEYRRPRKKNAAHTRYLTMYEYESASGEPTHLFINGLPFDAQVTETPRQGTSEVWHVINLTEDNHPLHIHLGLFIVLDQTELLKMEEFKSCMQKNNDALKCDIQKHATGKVVPAPAQERGWKNVFKMKPGHTTTILVQF

Protein Length: 321

Fln nts: TAGGCCTCCCGTCTGGCCCCGAATATGACCGTAATCTTATCGTATTTGACCGGAGCTTTGCTACAGACGGGTCTATTTATATGAACTCCACGGGCAACAACCCCTCTATCCATCCCCAGTGGCAGCCAGAGTATTTTGGAAATGCAATCATAGTGAACGGCAAGGCATGGCCTTACATGAAGGTxxxxxxxxxxxxxxxxxxxxxATTCAGAATTGTAAATGCCAGCAATGCTCGCTTCTACAGATTTGCCTTGAGCAACGGCCTGAGCGTGACCTTTGTGGGCTCCGACTCGGCATACTTACCTGCGCCTGTAAGCGTGAAAGAATTCCTGTTGGCTCCTTCGGAGATTGCAGACATCGTCGTGGATTTCAACGATTCGGCCACAGAGGAGGCCACATTAACAAACGACGCACCATATCCATACCCATCTGGAGACCCTGTCGACAATCTGAACAGCAAGGTCATGAAATTCCTTATCGAAACCCCGCCGGATGCCGCGAGTTCTGCTGAGAATCGATCATCCAGCCGGATCCCTGAAAAACTGGTTGAATATCGTCGGCCCCGAAAGAAAAACGCAGCGCATACGAGGTACTTGACCATGTATGAATACGAAAGCGCTTCTGGAGAACCGACCCATTTGTTCATCAACGGATTACCCTTCGACGCACAGGTTACAGAGACCCCAAGGCAAGGAACCAGCGAGGTATGGCATGTCATCAATCTGACGGAGGACAATCATCCTCTGCATATCCATCTGGGGCTGTTCATAGTCCTTGACCAAACAGAACTGCTGAAGATGGAGGAATTTAAGAGCTGCATGCAGAAGAATAACGACGCGCTGAAATGCGATATACAGAAGCACGCCACGGGAAAAGTCGTGCCAGCTCCTGCGCAGGAGCGTGGATGGAAAAACGTGTTTAAGATGAAGCCTGGGCATACGACAACCATTCTTGTCCAGTTT

Fln Alignment:

Contig27960___GLPSGPEYDRNLIVFDRSFATDGSIYMNSTGNNPSIHPQWQPEYFGNAIIVNGKAWPYMKVxxxxxxxFRIVNASNARFYRFALSNGLSVTFVGSDSAYLPAPVSVKEFLLAPSEIADIVVDFNDSATEEATLTNDAPYPYPSGDPVDNLNSKVMKFLIETPPDXXXXXXXXXXXRIPEKLVEYRRPRKKNAAHTRYLTMYEYESASGEPTHLFINGLPFDAQVTETPRQGTSEVWHVINLTEDNHPLHIHLGLFIVLDQTELLKMEEFKSCMQKNNDALKCDIQKHATGKVVPAPAQERGWKNVFKMKPGHTTTILVQF
B8LRY9_______________GLPSGPEYDRNLLIFDRSFATDGSIYMNSTGNNPSIHPQWQPEYFGDAIIVNGKAWPYLKVxxxxxxxFRILNASNARFYRFALSNGLNMTHIGSDSTYIPMPVTAKQFLLGPSELADIVIDFTDSPTGEAILTNDAVYPYPSGDPVDHLNSKVMKFVIESK---RGALSSHDESRIPEKLIEYRRPLKESAAHTRYITMYEYESASEEPTHLFFNGLPYDAPATETPRQGTSELWHVIDLTDDNHPLHIHLGLFVVLQQTELLKLDEFKACMQKQNDALRCNVEKHAKGKVMAAPVQERGWKNVFKIQPGYITTILVQF

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
220	50			50	1.0
277		40		60	1.0
340	60			40	1.0
383	40		60		1.0
395			50	50	1.0
396		50		50	1.0
437		50	50		1.0
438		50		50	1.0
464	50		50		1.0
658	50	50			1.0
693		50		50	1.0
916	66		33		0.997452
932		66		33	0.997452
937		66	33		0.997452
939		33		66	0.997452
941			33	66	0.997452
942		33		66	0.997452
944	33		66		0.997452
945	33		66		0.997452
948		66		33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain