SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene27952

Length: 2144 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene27952
CAAACGTCCTATAATTCAGTACTTCCACTGCATGTGATCTCTTTGTGATCTCTTTGTTATGTGTGTGTTTCATTAAATTTCGAATAAATACGGTATAAACTGGTGGAGGCCCAGGCAAATCAAAAGAAGCAAAACTGGTGGAGGTCAGTCACCCATATTAGAGTCGTTTCAGAGTTTTCTTACTCTGCAGTCCATATATTTTTTCATTCCTCTGTCTCTGCAAACAGAGACTTGTCATCCATGGATTCCAGATTTGTTTTTCTTCTCTGCGTTCTCGCTTTAGCGAGCACTGGATCGTGCGAGAAATTGTTTATCGGCCGAGCAAAGGCAATCGAATGTTCCGTGAGCGTTCCCCAGAATTTCAAAAATTCAGTTCTGGGTGGAACGAATCAGCCCGAGTTCGAATCATATGCCGGCCTGAACAGAACAGGAACGGAAGGATTTGAGGCTGTGAATTATCTTTTTGAGACTCTTCAGTCGAAGCCTTTTTCGAATCTTTTAAGTCTTTCCACTGCCAGCGACAGAGTGTGGCCCACATTGAAGTTCAGCTGGAGGATCGTCGTGGCCACGATTATTGGATTTGTGGGATCGGCTTGTGGGACTGTAGGTGGGGTAGGTGGTGGAGGCATATTTGTTCCCATGCTCAACCTCATAGTGGGATTCGACACCAAATCTGCGGCGGCTTTATCAAAATGTATGATCATGGGTGCATCAACTTCATCAGTGTGGTACAATTTAAGAGTTAGGCATCCCACAAGAGATGTACCAATTATTGACTACGACCTTGCACTTCTTTTCCAACCCATGTTAATGATGGGTATTACAGCTGGAGTGACTCTAAGTGTGATATTTCCATATTGGTTGATAACAACTCTTATCATTATCCTTTTCATCGGGACTTCATCTAGGTCCTTCTTTAAGGGTATAGAAATGTGGAAGAAAGAGACAAAGATTAAGAATGAGGAGGTGGCCACCCCCATACTAGCTACCCAAGATGTGGATTATGAGGCTATTCCAAGTGATCAAGACAGAAATGGAACACTGGAAACAATATGTTTCAACATTAGATGGAAAGGACTTTCAATTCTCATGGTTGTATGGATTCTTTTTTAATTCGTCGTGACCTTGGCTGTCACTCAAGTTGTTTGTGGTGTGGAGTATTGGATAGTGAATGCATTGCAGATTCCAGTGGCATTTGGTGTTTGCATCTATGAAGCAATATTTCTATACAAGAGTAGCAAGAGCAAGAGACAATGTGGAGACATGGATAATGTTTGTGAGGCTTCTGTTGAGTGGGGAGCAACTGTGTTGGTTTTATGTGCAACTTGTGGAATTGTGGGTGGCATTGTTGGAGGTTTACTTGGCTCTGGTGGTGGATTCATCTTAGGACCTCTACTTCTTGAAATTGGTGTAATTCCACAGGTTGCAAGTGCCACTGCAACATTCGTGATGATGTTTTCCTCCTCATTGTCAGTGGTGGAATTTTATTTTTTGAATAGATTTCCACTTCCCTATGCTTTATATCTTATGAGTATATCTATTTTAGCTGGATTTTGGGGGCAATACATCCTTCGAAAGATTGTTACAATACTTGGAAGGGCTTCGATCATCGTCTTCATTCTCTCTGGGGTGATTATTATTAGTGCAATAACAATGGGGGCTGTTGGAATTGAGAGAAGTATTCATATGATCCACGAGAAGGAGTACATGGGCTTTTTCAACCTTTGTCAAGAATCCTAGTAAGACTTCTCGTACTTCAAAAAATAAGTATATGCATTCCTGAAAAGATATGCAAGTTAAGAAATATTAGGGACATTCCCTAATTTATCTTTGCCTAGGTCCGATTGGAGTGGTTTATCAAGGAAACATGCAAGTTAAAAAGAAGTGTTAGAGACATTGTCTACTTTATCTCCAGCTAGGTTGTATAATGGTGGTCCATCAAGGAAGTCCAATAGTTAGTGTTGACATCTTAAATTTTCAATAAAGCTAGTTGGCATCCCATTCCTTATATGGAATGCTAGTCAACTCCTCGTTGACTAGATCATAGATATTTTTTAAGGATGACTACAAATAATATTAAAACTGATTCATATATTATGGTTGTTAACTATCAAATGTAGTGATTCTCTTTTAAGCAACATTCA

Ace file of the UniGene sp_v2.0_unigene27952

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Sulfite exporter TauE/SafE family protein [Arabidopsis thaliana] gb\|AAL77676.1\| At2g36630/F1O11.26 [Arabidopsis thaliana] gb\|AAM91463.1\| At2g36630/F1O11.26 [Arabidopsis thaliana] gb\|AEC09275.1\| Sulfite exporter TauE/SafE family protein [Arabidopsis thalia	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	54%
Blast2go	sulfite exporter family protein	-	-	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF81	IPR002781	-	0.0	-
Sma3	Peptidase S16, lon N-terminal	IPR003111	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LL03

Fln msg:

Fln protein: MDSRFVFLLCVLALASTGSCEKLFIGRAKAIECSVSVPQNFKNSVLGGTNQPEFESYAGLNRTGTEGFEAVNYLFETLQSKPFSNLLSLSTASDRVWPTLKFSWRIVVATIIGFVGSACGTVGGVGGGGIFVPMLNLIVGFDTKSAAALSKCMIMGASTSSVWYNLRVRHPTRDVPIIDYDLALLFQPMLMMGITAGVTLSVIFPYWLITTLIIILFIGTSSRSFFKGIEMWKKETKIKNEEVATPILATQDVDYEAIPSDQDRNGTLETICFNIRWKGLSILMVVWILF*FVVTLAVTQVVCGVEYWIVNALQIPVAFGVCIYEAIFLYKSSKSKRQCGDMDNVCEASVEWGATVLVLCATCGIVGGIVGGLLGSGGGFILGPLLLEIGVIPQVASATATFVMMFSSSLSVVEFYFLNRFPLPYALYLMSISILAGFWGQYILRKIVTILGRASIIVFILSGVIIISAITMGAVGIERSIHMIHEKEYMGFFNLCQES*

Protein Length: 501

Fln nts: CAAACGTCCTATAATTCAGTACTTCCACTGCATGTGATCTCTTTGTGATCTCTTTGTTATGTGTGTGTTTCATTAAATTTCGAATAAATACGGTATAAACTGGTGGAGGCCCAGGCAAATCAAAAGAAGCAAAACTGGTGGAGGTCAGTCACCCATATTAGAGTCGTTTCAGAGTTTTCTTACTCTGCAGTCCATATATTTTTTCATTCCTCTGTCTCTGCAAACAGAGACTTGTCATCC_-_ATGGATTCCAGATTTGTTTTTCTTCTCTGCGTTCTCGCTTTAGCGAGCACTGGATCGTGCGAGAAATTGTTTATCGGCCGAGCAAAGGCAATCGAATGTTCCGTGAGCGTTCCCCAGAATTTCAAAAATTCAGTTCTGGGTGGAACGAATCAGCCCGAGTTCGAATCATATGCCGGCCTGAACAGAACAGGAACGGAAGGATTTGAGGCTGTGAATTATCTTTTTGAGACTCTTCAGTCGAAGCCTTTTTCGAATCTTTTAAGTCTTTCCACTGCCAGCGACAGAGTGTGGCCCACATTGAAGTTCAGCTGGAGGATCGTCGTGGCCACGATTATTGGATTTGTGGGATCGGCTTGTGGGACTGTAGGTGGGGTAGGTGGTGGAGGCATATTTGTTCCCATGCTCAACCTCATAGTGGGATTCGACACCAAATCTGCGGCGGCTTTATCAAAATGTATGATCATGGGTGCATCAACTTCATCAGTGTGGTACAATTTAAGAGTTAGGCATCCCACAAGAGATGTACCAATTATTGACTACGACCTTGCACTTCTTTTCCAACCCATGTTAATGATGGGTATTACAGCTGGAGTGACTCTAAGTGTGATATTTCCATATTGGTTGATAACAACTCTTATCATTATCCTTTTCATCGGGACTTCATCTAGGTCCTTCTTTAAGGGTATAGAAATGTGGAAGAAAGAGACAAAGATTAAGAATGAGGAGGTGGCCACCCCCATACTAGCTACCCAAGATGTGGATTATGAGGCTATTCCAAGTGATCAAGACAGAAATGGAACACTGGAAACAATATGTTTCAACATTAGATGGAAAGGACTTTCAATTCTCATGGTTGTATGGATTCTTTTTTAATTCGTCGTGACCTTGGCTGTCACTCAAGTTGTTTGTGGTGTGGAGTATTGGATAGTGAATGCATTGCAGATTCCAGTGGCATTTGGTGTTTGCATCTATGAAGCAATATTTCTATACAAGAGTAGCAAGAGCAAGAGACAATGTGGAGACATGGATAATGTTTGTGAGGCTTCTGTTGAGTGGGGAGCAACTGTGTTGGTTTTATGTGCAACTTGTGGAATTGTGGGTGGCATTGTTGGAGGTTTACTTGGCTCTGGTGGTGGATTCATCTTAGGACCTCTACTTCTTGAAATTGGTGTAATTCCACAGGTTGCAAGTGCCACTGCAACATTCGTGATGATGTTTTCCTCCTCATTGTCAGTGGTGGAATTTTATTTTTTGAATAGATTTCCACTTCCCTATGCTTTATATCTTATGAGTATATCTATTTTAGCTGGATTTTGGGGGCAATACATCCTTCGAAAGATTGTTACAATACTTGGAAGGGCTTCGATCATCGTCTTCATTCTCTCTGGGGTGATTATTATTAGTGCAATAACAATGGGGGCTGTTGGAATTGAGAGAAGTATTCATATGATCCACGAGAAGGAGTACATGGGCTTTTTCAACCTTTGTCAAGAATCCTAG___TAAGACTTCTCGTACTTCAAAAAATAAGTATATGCATTCCTGAAAAGATATGCAAGTTAAGAAATATTAGGGACATTCCCTAATTTATCTTTGCCTAGGTCCGATTGGAGTGGTTTATCAAGGAAACATGCAAGTTAAAAAGAAGTGTTAGAGACATTGTCTACTTTATCTCCAGCTAGGTTGTATAATGGTGGTCCATCAAGGAAGTCCAATAGTTAGTGTTGACATCTTAAATTTTCAATAAAGCTAGTTGGCATCCCATTCCTTATATGGAATGCTAGTCAACTCCTCGTTGACTAGATCATAGATATTTTTTAAaGATGACTACAAATAATATTAAAACTGATTCATATATTATGGTTGTTAACTATCAAATGTAGTGATTCTCTTTTAAGCAACATTCA

Fln Alignment:

Contig27952___NLLSLSTASD--RVWPTLKFSWRIVVATIIGFXXXXXXXXXXXXXXXXXXPMLNLIVGFDTKSAAALSKCMIMGASTSSVWYNLRVRHPTRDVPIIDYDLALLFQPMLMMGITAGVTLSVIFPYWXXXXXXXXXXXXXSSRSFFKGIEMWKKETKIKNEEVATPILAT---------QDVDYEAIPSD----QDRNGTLE-------------TICFNIRWKGLSILMVVWILF*FVVTLAVTQVVCGVEYWIVNALQIPVAFGVCIYEAIFLYKSSKSKRQCGDMDNVCEASVEWGATVLVLCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXVIPQVASATATXXXXXXXXXXXXEFYFLNRFPLPYALYLMSISILAGFWGQYILRKIVTILGRAXXXXXXXXXXXXXXAITMGAVGIERSIHMIHEKEYMGFFNLCQES
B8LL03_______________NFLWRSNISDYQRVWPEMKFGWRIVIGSIVGFFGAAVGSVGGVGGGGIFVPMLTLIIGFDAKSSTAISKCMIMGAAGSTVYYNLKLKHPTLDLPIIDYDLAMLFQPMLMLGISIGVAFNVIFADWMVTVLLIILFLGTSTKAFLKGVETWKQETILKKEAERVRVENVTADVEPEEHQEVDFKPLPSEPVPNEESNGNNEGSNNERLPTDVTNTIWFNVRWKELGILVVVWIIFLVLQVVKAKSTTCSVEYWVLNLLQIPVAMSVSLYEAIGLYKGTKAVASKG------EAGINWKISQLVLYFFCGILAGVVGGLLGLGGGFILGPLLLELGVPPQVSSATATFVMTFSSSMSVVEYYFLKRFPVPYAAYLFGVCVIAAFMGQHVIRRLVILLGRASLIIFILAFVIFLSAITLGGVGIVKMIHKFENGDYMGFENLCSYS

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
225	85			14	0.993533
226	85		14		0.993533
227		85	14		0.993533
228	85		14		0.993533
347		14	85		0.993533
401	10		90		0.90298
437			90	10	0.90298
463		12		87	0.992554
587			88	11	0.923564
688		10		90	0.90298
970		28		71	1.0
971	28		71		1.0
1065	83	16			0.994512
1183		28		71	1.0
1185		28	71		1.0
1186	28	71			1.0
1830		14		85	0.993533
2026	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain