SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene27909

Length: 997 nt

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene27909

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	KDEL motif-containing protein 1, putative n=1 Tax=Ricinus communis RepID=B9RDP6_RICCO	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	kdel motif-containing protein 1	-	-	74%

Source	InterPros	Term	Type	Identity
Sma3	Proteinase inhibitor I3, Kunitz legume	IPR002160	-	-
Sma3	Adenosine deaminase/editase	IPR002466	-	-
Sma3	Lipopolysaccharide-modifying protein	IPR006598	-	-
Sma3	Protein of unknown function DUF821, CAP10-like	IPR008539	-	-
Sma3	Thymidylate kinase, conserved site	IPR018095	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	Peptidase S26A, signal peptidase I, conserved site	IPR019758	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A7X0

Fln msg: Overlapping hits, possible frame ERROR between 615 and 608, Distance to subject end: 120 aas, your sequence is shorter than subject: 333 - 492

Fln protein: MAFPWSSILTAISVQGKAIRQSISKIRLTPECSPSTVCSASSWLRLLNNSSNKDEAAMCPFYFKWIRQDLKPWAKTGITVDMVEAAKPEASFRLMVVNGRMYIETYRKCYQSRDLFTQWAIAQFLKFYPGLLPDLDLMFNCDDNPVIHRKDYNDSTGPPPPLFRYSGSEDTLDIVFPDWSFWGWPEIMSPPWEPLVKDIQTGxxxxIKWEDRDPSAYWKGNPYTGWRQELLKCNDRPHWNGRIYVQDWGREASQGFQGSKLADQCDHRFKIFMEGNAWSVSLKNILACDSTTLLITPKYYDFFLRGLVPRKHYWPVKTEKLCDSIDFAVKWGN

Protein Length: 334

Fln nts: ATGGCTTTTCCCTGGTCTTCGATATTGACTGCCATATCTGTCCAGGGAAAAGCCATCCGGCAGAGCATATCGAAGATCAGGTTAACGCCAGAGTGTTCGCCCAGCACAGTGTGTTCGGCATCATCATGGCTTCGCCTCCTCAACAACTCAAGTAATAAGGATGAAGCCGCTATGTGCCCCTTCTATTTCAAGTGGATTCGCCAGGACTTGAAGCCTTGGGCTAAGACTGGCATTACTGTAGACATGGTTGAAGCTGCAAAACCAGAGGCGTCTTTCAGGCTGATGGTTGTGAATGGCAGGATGTATATCGAAACCTATCGAAAGTGTTATCAGAGCAGAGATCTGTTTACGCAATGGGCGATTGCGCAGTTTTTGAAATTCTATCCCGGATTGCTTCCCGACTTGGACTTGATGTTCAATTGCGATGATAATCCCGTTATCCATCGGAAAGACTACAACGATTCAACAGGGCCTCCTCCCCCGCTGTTTCGTTATTCCGGGAGCGAAGATACTCTGGATATTGTCTTTCCAGATTGGTCTTTCTGGGGATGGCCAGAGATAATGTCACCACCATGGGAGCCACTAGTGAAGGATATCCAGACTGGTxxxxxxxxxxxxATCAAGTGGGAAGACAGGGATCCCTCTGCCTACTGGAAAGGCAATCCCTATACCGGATGGAGGCAGGAACTTCTGAAGTGCAACGACAGGCCCCATTGGAACGGTCGTATTTATGTTCAGGACTGGGGTAGAGAGGCAAGTCAAGGGTTTCAAGGATCCAAACTTGCAGACCAATGTGATCACAGATTCAAGATATTCATGGAAGGAAACGCGTGGTCAGTGAGCCTGAAGAATATTTTGGCGTGTGATTCCACAACTCTTTTGATCACACCAAAATACTATGACTTCTTTCTGAGAGGCCTTGTTCCACGAAAACATTACTGGCCAGTAAAAACTGAAAAACTGTGTGACTCCATCGATTTTGCTGTTAAATGGGGAAAC

Fln Alignment:

Contig27909___QSISKIRLTPECSPSTVCXXXXXXXXXXXXXXKDEAAMCPFYFKWIRQDLKPWAKTGITVDMVEAAKPEASFRLMVVNGRMYIETYRKCYQSRDLFTQWAIAQFLKFYPGLLPDLDLMFNCDDNPVIHRKDYNDSTGPPPPLFRYSGSEDTLDIVFPDWSFWGWPEIMSPPWEPLVKDIQTGxxxIKWEDRDPSAYWKGNPYTGW-RQELLKCNDRPHWNGRIYVQDWGREASQGFQGSKLADQCDHRFKIFMEGNAWSVSLKNILACDSTTLLITPKYYDFFLRGLVPRKHYWPVKTEKLCDSIDFAVKWGN
D5A7X0_______________QGISVTRKMLNCSPSTVCSASSWLPLVKKSSYKDEAAFCPFYFKWIRQDMKPWAKSGITIDMVEAAKPEASFRLTVVNGRMYIESYRKCYQSRDLFTIWGIAQFLKFYPRLLPDLDSMFNCDDNPVIHRGDYNDSTKPPPPLFRYSGSEDTFDIVFPDWSFWGWPEIRTPPWETLAKEIQNGxxxVKWEDRDPTAYWKGNPYMGQGRQDLMNCIHRRHWGGRLYNQDWDKETRQGFRQSKLSDQCHHRYKIYIEGNAWSVSLKNIMACDSPTLLITPQYYDFYLRGLVPQRHYWPIRADKKCDSIQFAVDWGN

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
735	75			25	0.996473
739		75	25		0.996473
754	75		25		0.996473
790	60		40		1.0
795	60		40		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain