SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene27888

Length: 2463 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene27888
ACCGATTGCGTAGATATAGAATTAAAATTAGAAATTCGGATAGGGTCGCTAGTAGATTGACGCCAATCGGTAATCTCTATCCAGGGATGTAAGAAATTTTCCTCAGCGTTGTTGAGGGGCTACACAAATACATCAAAGCCGTTTTTGGGCACTGCATTGGTTTGCAGTTGGAGGGCACATTTGGGTAAAAAACTCCAAACTCAAAAGATCATGGCCTCTGTCGATCGGCGATACTCTCTTCCGGAGGATGCACTATTTCTTGGCTTTGACAGCTCTACACAGTCTCTCAAAGCGACTGTTTTGGACTATAATCTGCGTATTGTCCTCTCTGAAACAGTTCATTTTGATTCAGAGTTGCCACATTTCAAGACAAAGGATGGAGTATACAGAGATCCATCGGGCAATGGGCGTGTTGTGTCATCACCTTTGATGTGGGTAGAAGCTCTTGACCTCATACTGAACAAATTGAAGAAGGCAAATTTAAAGTTTGATAAAATCAGGGCTATTTCTGGAAGTGGGCAGCAGCACGGGAGTGTTTATTGGAGAAAGGGTGCCCTGGAATCGATTCTAAAAGGAGTGAATCCAAAAGATCCTTTGGCTGTCCAGCTTCAGGATGCTTTCTCCACGAATGAATCACCTATTTGGATGGACAGTAGTACAACATCACAGTGCAGAGAAATTGAGAAGGCTGTTGGTGGAGCACTTGAATTGGCTTTGCTTACTGGTTCTTGTGCACATGAAAGATACACAGGACCTCAGATACGGAAATTATATCAGACACAAAAGGATGTCTATGATAACACTGAAAGAATTTCTCTTGTAAGTTCTTTCATGGCATCCCTTTTTATTGGTGGCTATGCCAATATTGATGAAACTGATGGAGCAGGGATGAATTTGATGGATCTAAGGGAAAGAACTTGGTCGAAGGAAGCCATAGAGGCCACTGCTCCAAACTTGGAAGAGAAACTTGGACCATTGGCTCCATCATATGCTATTGCTGGTAATTTGAGCTCATATTTTGTAGACAGGTTCATGTTTGACAAAAAATGTTTGGTTATCCAGTGGTCTGGAGACAATCCAAATAGCTTGGCAGGTTTGGCTTTGAATCGTCCTGGAGACCTTGCAATCAGTTTGGGTACAAGTGATGTGGTTTTTGGAATTACAACTGAACCACACCCTGGCCTAGAAGGACATGTTTTACCCAATCCTGTTGATCCAAATTGCTATATGGTGATGCTGGTTTACAAAAATGGGTCACTAACACGAGAAGAGATTCGAAACCGCTGTGCAAATGGATCATGGGACACGTTCAACAAATTTTTAGATCAAACTCCTCCTCTAAATGGTGGGAAATTAGGATTCTACTTTAAAGAACCCGAGATTCTCCCTCCTCTCCCAGTTGGAATCCATCGCTATCAGCTGAGTAACGATGAGGATCAAGCAAAGGGTGGTGTAACAGTTCAGAATGTACCAGAGTTTGATGCACCTTCTGAGGTACGGGCAATTATTGAAGGCCAGTTCCTGTCAATGCGTGCACATGCAGAGAGGATAGGAATGCCAACACCACCAGAACGACTGATAGCAACTGGCGGAGCATCTGCAAATAGCCAGCTCCTTTCTGTCATTGCTTCAATTTTTGGTTGTGCTGTCTATACTGTTCAAAGGCCAGATTCTGCTTCACTAGGTGCTGCATTGAGGGCAGCTCATGGATGGGTATGCCAAAAGGAAGGTAAATTTGTACCTATTTCACGACTATATGAAGAAAAATCAGAAGATACATCATTGGCATGTAAACTTGCTGCCCCTGCTGGTGACACGGATTTATACTTCAAGTATGGCTCTATTATGTCTGAGAGGATGAAAATTGAGCAGGAGTTGGTGGAGCAGGTTGTTACTAAATAGATGCATCTCCTCATCCACCAGGTCAATGGTCAGTGAAAGAAAAGATGGTTGCATGCATGCCATGGGCTTAATATTTTTTCATATGATAGTCATAGAGCCTGCCATTGGTGGCTTAAATCATACCATTTTCACAGAAATAGTCACTACCCATAGTCCTGTTTGAGGGTGACAATTTTGCTTACCATCAACACAGACTGATGGCAGCTGCAGAAACTATTTTTCATATATGAATGTTGATGGGTTACTTATATCGAATGGATGAAACTGGTTGTGGGTGATTTGGTAAATGTCCTCATCTATCCTTATGTATTCTAGTAGAATATTCATTTTATAACATTTTCCTTGCTCTATGTTAATAGACCTTTGCATGCTTGACTACTGTAATTTCGAATTGCCCATTGTTGATGAGAAAGTAATCCCCAAAGGGAATATTGAATTGTATTTTGATGATTCGTTTATGTATACTTTTGTTTCTTTGAATGTATTGAACTCAGATTCTTGTATTTGGTATTCTTATGCTTTTGTGGCATTTGAACACAAAGCTGGACGTCAAATACTAGG

Ace file of the UniGene sp_v2.0_unigene27888

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	xylulose kinase-2 [Arabidopsis thaliana] gb\|AAK92778.1\| putative xylulose kinase [Arabidopsis thaliana] gb\|AAN13165.1\| putative xylulose kinase [Arabidopsis thaliana] gb\|AED95841.1\| xylulose kinase-2 [Arabidopsis thaliana]	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	70%
Blast2go	xylulose kinase	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Xylulokinase.	EC:2.7.1.17	-	0.0	79%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Pentose and glucuronate interconversions	00040		0.0	79%
Blast2go	Metabolic pathways	01100		0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	xylulose metabolic process	GO:0005997	Biological Process	79%
Blast2go	xylulokinase activity	GO:0004856	Molecular Function	79%
Blast2go	cytosol	GO:0005829	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	Carbohydrate kinase, FGGY	IPR000577	-	-
Sma3	Carbohydrate kinase, FGGY, N-terminal	IPR018484	-	-
Sma3	Carbohydrate kinase, FGGY, C-terminal	IPR018485	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: E0CNV3

Fln msg:

Fln protein: MASVDRRYSLPEDALFLGFDSSTQSLKATVLDYNLRIVLSETVHFDSELPHFKTKDGVYRDPSGNGRVVSSPLMWVEALDLILNKLKKANLKFDKIRAISGSGQQHGSVYWRKGALESILKGVNPKDPLAVQLQDAFSTNESPIWMDSSTTSQCREIEKAVGGALELALLTGSCAHERYTGPQIRKLYQTQKDVYDNTERISLVSSFMASLFIGGYANIDETDGAGMNLMDLRERTWSKEAIEATAPNLEEKLGPLAPSYAIAGNLSSYFVDRFMFDKKCLVIQWSGDNPNSLAGLALNRPGDLAISLGTSDVVFGITTEPHPGLEGHVLPNPVDPNCYMVMLVYKNGSLTREEIRNRCANGSWDTFNKFLDQTPPLNGGKLGFYFKEPEILPPLPVGIHRYQLSNDEDQAKGGVTVQNVPEFDAPSEVRAIIEGQFLSMRAHAERIGMPTPPERLIATGGASANSQLLSVIASIFGCAVYTVQRPDSASLGAALRAAHGWVCQKEGKFVPISRLYEEKSEDTSLACKLAAPAGDTDLYFKYGSIMSERMKIEQELVEQVVTK*

Protein Length: 565

Fln nts: ACCGATTGCGTAGATATAGAATTAAAATTAGAAATTCGGATAGGGTCGCTAGTAGATTGACGCCAATCGGTAATCTCTATCCAGGGATGTAAGAAATTTTCCTCAGCGTTGTTGAGGGGCTACACAAATACATCAAAGCCGTTTTTGGGCACTGCATTGGTTTGCAGTTGGAGGGCACATTTGGGTAAAAAACTCCAAACTCAAAAGATC_-_ATGGCCTCTGTCGATCGGCGATACTCTCTTCCGGAGGATGCACTATTTCTTGGCTTTGACAGCTCTACACAGTCTCTCAAAGCGACTGTTTTGGACTATAATCTGCGTATTGTCCTCTCTGAAACAGTTCATTTTGATTCAGAGTTGCCACATTTCAAGACAAAGGATGGAGTATACAGAGATCCATCGGGCAATGGGCGTGTTGTGTCATCACCTTTGATGTGGGTAGAAGCTCTTGACCTCATACTGAACAAATTGAAGAAGGCAAATTTAAAGTTTGATAAAATCAGGGCTATTTCTGGAAGTGGGCAGCAGCACGGGAGTGTTTATTGGAGAAAGGGTGCCCTGGAATCGATTCTAAAAGGAGTGAATCCAAAAGATCCTTTGGCTGTCCAGCTTCAGGATGCTTTCTCCACGAATGAATCACCTATTTGGATGGACAGTAGTACAACATCACAGTGCAGAGAAATTGAGAAGGCTGTTGGTGGAGCACTTGAATTGGCTTTGCTTACTGGTTCTTGTGCACATGAAAGATACACAGGACCTCAGATACGGAAATTATATCAGACACAAAAGGATGTCTATGATAACACTGAAAGAATTTCTCTTGTAAGTTCTTTCATGGCATCCCTTTTTATTGGTGGCTATGCCAATATTGATGAAACTGATGGAGCAGGGATGAATTTGATGGATCTAAGGGAAAGAACTTGGTCGAAGGAAGCCATAGAGGCCACTGCTCCAAACTTGGAAGAGAAACTTGGACCATTGGCTCCATCATATGCTATTGCTGGTAATTTGAGCTCATATTTTGTAGACAGGTTCATGTTTGACAAAAAATGTTTGGTTATCCAGTGGTCTGGAGACAATCCAAATAGCTTGGCAGGTTTGGCTTTGAATCGTCCTGGAGACCTTGCAATCAGTTTGGGTACAAGTGATGTGGTTTTTGGAATTACAACTGAACCACACCCTGGCCTAGAAGGACATGTTTTACCCAATCCTGTTGATCCAAATTGCTATATGGTGATGCTGGTTTACAAAAATGGGTCACTAACACGAGAAGAGATTCGAAACCGCTGTGCAAATGGATCATGGGACACGTTCAACAAATTTTTAGATCAAACTCCTCCTCTAAATGGTGGGAAATTAGGATTCTACTTTAAAGAACCCGAGATTCTCCCTCCTCTCCCAGTTGGAATCCATCGCTATCAGCTGAGTAACGATGAGGATCAAGCAAAGGGTGGTGTAACAGTTCAGAATGTACCAGAGTTTGATGCACCTTCTGAGGTACGGGCAATTATTGAAGGCCAGTTCCTGTCAATGCGTGCACATGCAGAGAGGATAGGAATGCCAACACCACCAGAACGACTGATAGCAACTGGCGGAGCATCTGCAAATAGCCAGCTCCTTTCTGTCATTGCTTCAATTTTTGGTTGTGCTGTCTATACTGTTCAAAGGCCAGATTCTGCTTCACTAGGTGCTGCATTGAGGGCAGCTCATGGATGGGTATGCCAAAAGGAAGGTAAATTTGTACCTATTTCACGACTATATGAAGAAAAATCAGAAGATACATCATTGGCATGTAAACTTGCTGCCCCTGCTGGTGACACGGATTTATACTTCAAGTATGGCTCTATTATGTCTGAGAGGATGAAAATTGAGCAGGAGTTGGTGGAGCAGGTTGTTACTAAATAG___ATGCATCTCCTCATCCACCAGGTCAATGGTCAGTGAAAGAAAAGATGGTTGCATGCATGCCATGGGCTTAATATTTTTTCATATGATAGTCATAGAGCCTGCCATTGGTGGCTTAAATCATACCATTTTCACAGAAATAGTCACTACCCATAGTCCTGTTTGAGGGTGACAATTTTGCTTACCATCAACACAGACTGATGGCAGCTGCAGAAACTATTTTTCATATATGAATGTTGATGGGTTACTTATATCGAATGGATGAAACTGGTTGTGGGTGATTTGGTAAATGTCCTCATCTATCCTTATGTATTCTAGTAGAATATTCATTTTATAACATTTTCCTTGCTCTATGTTAATAGACCTTTGCATGCTTGACTACTGTAATTTCGAATTGCCCATTGTTGATGAGAAAGTAATCCCCAAAGGGAATATTGAATTGTATTTTGATGATTCGTTTATGTATACTTTTGTTTCTTTGAATGTATTGAACTCAGATTCTTGTATTTGGTATTCTTATGCTTTTGTGGCATTTGAACACAAAGCTGGACGTCAAATACTAGG

Fln Alignment:

Contig27888___SLPEDALFLGFDSSTQSLKATVLDYNLRIVLSETVHFDSELPHFKTKDGVYRDPSGNGRVVSSPLMWVEXXXXXXXXXXXXXXXXXXXRAISGSGQQHGSVYWRKGALESILKGVNPKDPLAVQLQDAFSTNESPIWMDSSTTSQCREIEKAVGGALELALLTGSCAHERYTGPQIRKLYQTQKDVYDNTERISLVSSFMASLFIGGYANIDETDGAGMNLMDLRERTWSKEAIEATAPNLEEKLGPLAPSYAIAGNLSSYFVDRFMFDKKCLVIQWSGDNPNSLAGLALNRPGDLAISLGTSDVVFGITTEPHPGLEGHVLPNPVDPNCYMVMLVYKNGSLTREEIRNRCANGSWDTFNKFLDQTPPLNGGKLGFYFKEPEILPPLPVGIHRYQLSNDEDQAKGGVTVQNVPEFDAPSEVRAIIEGQFLSMRAHAERIGMPTPPERLIATGGASANSQLLSVIASIFGCAVYTVQRPDSASLGAALRAAHGWVCQKEGKFVPISRLYEEKSEDTSLACKLAAPAGDTDLYFKYGSIMSERMKIEQELVEQV
E0CNV3_______________SLPHDSLFLGFDSSTQSLKATVLDSNLNLVTSEIVHFDSQLPHYRTRDGVYRDASENGRIVSPTLMWVEALELVLQKLSKSKLDFGKIAAISGSGQQHGSVYWKSGS-SAILSSLDPSKPLVGQLGDAFSTKESPIWMDSSTTEQCREIEEAVGGALELSRLTGSRAHERYTGPQIRKIFLKLPEIYNQTERISLVSSFMASLLIGSYACIDETDGAGMNLMDIKQRAWSKIALEATAPSLEEKLGKLAPAHAVAGFIAPYFVERFHFNKNCLIVQWSGDNPNSLAGLTLNTPGDLAISLGTSDTVFGITSNPQPSLEGHVFPNPVDTEGYMVMLCYKNGSLTREDVRNRCAKESWEVFNEFLEKTPPLNGGKIGFYYKDHEILPPLPVGFHRYVLQGFTGENLDGINECEVEEFDPSSEVRAVIEGQFLSMRGHAERFGMPSPPKRIIATGGASANHSILKSIASIFGCDVYTVQRPDSASLGAALRAAHGWLCNTRGKFVPTSCLYKDKLEKTSLSCKLAVTAGDKPLVSKYGLLMKKRMEIEKHLVQKL

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
542		25	75		0.996473
544	75		25		0.996473
545	25		75		0.996473
546	75		25		0.996473
556		75		25	0.996473
1301		33		66	0.997452
1444	77		22		0.999999
1457	77		22		0.999999
1621		16		83	0.994512
1630			12	87	0.992554
1633	87			12	0.992554
1634	90		10		0.90298
1635	11			88	0.923564
1636		14		85	0.993533
1637		14		85	0.993533
1642		14		85	0.993533
1646	14		85		0.993533
1707	88		11		0.923564
1709		11	88		0.923564
1714		11	88		0.923564
1715		11	88		0.923564
1717	88			11	0.923564
1718			11	88	0.923564
1721		88		11	0.923564
1722	88		11		0.923564
1723	88			11	0.923564
1724	88	11			0.923564
1726		11	88		0.923564
1727			88	11	0.923564
1728	88	11			0.923564
1829			11	88	0.923564
1832	88		11		0.923564
1834		11	88		0.923564
1835		11		88	0.923564
1836	88			11	0.923564
1842		88	11		0.923564
1846	11			88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain