SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene27875

Length: 1663 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene27875

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	HOS1 n=1 Tax=Citrus trifoliata RepID=D6BP27_PONTR	-	-	44%
FL-Next	sp=E3 ubiquitin-protein ligase HOS1; Arabidopsis thaliana (Mouse-ear cress).	-	-	50%
Blast2go	e3 ubiquitin-protein ligase hos1-like	-	-	62%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	62%

Source	GOs	Term	Type	Identity
Blast2go	response to cold	GO:0009409	Biological Process	62%
Blast2go	protein ubiquitination	GO:0016567	Biological Process	62%
Blast2go	negative regulation of transcription, DNA-dependent	GO:0045892	Biological Process	62%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	62%
Blast2go	cytoplasm	GO:0005737	Cellular Component	62%
Blast2go	nucleus	GO:0005634	Cellular Component	62%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: Q84JU6

Fln msg: STOP codon was not found. Distance to subject end: 43 aas, your sequence is shorter than subject: 554 - 927

Fln protein: RNLVVESLVFYLLDDNTEEALEEACRLLPEIVSPTTHPKVARVLLERQNPDAALMVLRCSGHDGQFGITDSGFQRAGVVALPEAVTAVRVRLECGLLTEAYLYQKTHCQRVRAEQTKHRQMTAGLRGAEDMIGCRDWLTEMEILVGEICWLCIRRKLVDRMIELPWNSNEEKFLQKCLLDRTVQDPSSSAGNLLVVFFIQRCRYPEAYQIHKRLCDLEQQSISQSIDKKMVERIEIACEWRTRLIEKCIELLPEIQRRDLRSGNISECPVSPLTGEQYQPFDMEIEQTIFSAVSNPSASILPPSVGQQPFDGRKSELIQNSSINSDDIPSATTVGLGDNCQPCILHVKPFRHIAGSSSFNPRLDSSRLLNGQAKQKDQEKPGVSPIRSRILNDDFESGKSLHENESSEQHSFLSNYTPSQEEGNMEKDVAYRIQSKGLFSDSSNETRGLEVLIRTQNGSGSSKQNGHSISGAVSLVKDREQVSLENGVHIRDLPTTSSFDAPRSRIVMSQERLSVSTRTDLDVSGLPISGPGSSGKRLPSDRSWLASPSDDDFW

Protein Length: 555

Fln nts: CAGAAATTTAGTTGTTGAATCATTAGTCTTTTATCTGTTGGATGATAATACAGAGGAGGCATTAGAGGAGGCCTGTCGTCTTCTTCCAGAAATTGTCAGTCCGACTACACATCCGAAAGTTGCACGTGTTTTACTTGAAAGGCAAAATCCAGATGCAGCTTTGATGGTGTTACGTTGCTCTGGACATGATGGCCAGTTTGGAATCACAGATTCCGGCTTCCAGAGGGCAGGTGTAGTTGCTCTTCCTGAGGCTGTGACGGCTGTCAGAGTCAGGCTTGAGTGTGGACTTCTAACTGAAGCTTATCTTTATCAGAAAACACACTGCCAACGAGTCAGAGCAGAGCAAACAAAACATCGTCAAATGACAGCTGGATTACGTGGAGCAGAAGATATGATTGGGTGTCGGGATTGGCTTACAGAAATGGAGATTCTAGTGGGTGAGATATGCTGGTTATGTATTAGAAGAAAATTAGTGGATAGGATGATTGAGTTACCTTGGAACAGCAACGAGGAAAAGTTCTTGCAAAAGTGCCTTTTAGATAGAACTGTTCAAGATCCTTCATCTTCTGCTGGAAATCTTCTAGTTGTGTTTTTCATCCAGCGATGTCGCTACCCTGAAGCGTATCAGATTCATAAAAGGCTTTGCGACTTGGAACAACAATCTATATCCCAAAGTATTGATAAGAAAATGGTCGAGAGAATTGAAATTGCGTGTGAATGGAGAACGCGGTTGATTGAAAAATGTATTGAGTTGCTACCAGAAATACAGCGTCGAGATCTAAGAAGTGGAAATATTTCTGAATGTCCTGTTTCTCCTTTAACAGGAGAGCAGTACCAACCTTTTGATATGGAAATAGAGCAAACAATATTTTCCGCTGTTTCCAATCCATCTGCAAGCATATTGCCACCATCAGTAGGTCAACAACCATTTGATGGAAGGAAGAGTGAACTTATTCAAAATAGTTCCATCAACTCAGATGATATACCCTCTGCTACTACAGTGGGATTGGGTGATAATTGTCAGCCATGCATTCTTCATGTGAAACCATTCAGACACATAGCGGGAAGTTCATCATTTAATCCAAGGTTAGATTCATCTCGACTTCTGAATGGGCAGGCTAAGCAAAAAGATCAGGAAAAACCTGGTGTCAGTCCCATTCGAAGTCGGATATTGAATGATGACTTCGAGTCTGGGAAATCTTTGCACGAGAATGAATCTTCTGAGCAACATTCTTTTCTGTCAAATTACACACCCTCGCAGGAAGAAGGAAATATGGAGAAAGATGTTGCTTATAGAATTCAATCAAAGGGTTTATTCTCAGATTCGTCTAATGAGACGAGGGGACTTGAAGTATTAATTAGGACACAGAATGGAAGTGGAAGTTCTAAACAAAATGGACATTCCATTTCAGGAGCTGTTTCACTTGTGAAGGATAGGGAACAGGTGAGCCTTGAAAATGGTGTTCATATACGAGACTTACCAACTACTTCAAGCTTTGATGCACCACGTTCACGTATAGTGATGTCACAGGAGAGATTGTCTGTTTCAACTCGAACTGATTTGGATGTCTCAGGCCTTCCCATATCTGGCCCAGGATCAAGTGGAAAACGACTACCATCAGATCGTTCATGGCTGGCTAGTCCATCTGATGATGATTTTTGG

Fln Alignment:

Contig27875___RNLVVESLVFYLLDDNTEEALEEACRLLPEIVSPTTHPKVARVLLERQNPDAALMVLRCSGHDGQFGITDSGFQRAGVVALPEAVTAVRVRLECGLLTEAYLYQKTHCQRVRAEQTKHRQMTAGLRGAEDMIGCRDWLTEMEILVGEICWLCIRRKLVDRMIELPWNSNEEKFLQKCLLDRTVQDPSSSAGNLLVVFFIQRCRYPEAYQIHKRLCDLEQQSISQS-IDKKMVERIEIACEWRTRLIEKCIELLPEIQRRDLRSGNISE
Q84JU6_______________RHSLLESFVFYLLDDHSEEALQEACRILPEICGPETYPKVAQVLLERDNPETALMVLRWSGRDGV----------SELVSIGEAVTALRVRVECGLLSEAFTYQRTLCLKVKENNLKN----GAVKHASDDLDIWSWTEWMEILVNEFCCLSIRRNLVDRIIELPWNPDEEKYLHRCLLDSATDDPSSAVGSLLVVFYLQRYRYIQAYQVDLRLQKIEEAFVSDNQIGEEVMFRMRSQSHWRKELVDRAIDILPVIQQQQVRSGQFSE

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
481	12		87		0.992554
674		87		12	0.992554
675		87	12		0.992554
677	83		16		0.999991
679	72	9		18	0.999994
691	72			9	0.999994
972		75		25	1.0
1006			62	37	1.0
1066	14		85		0.993533
1092	20		80		0.995493
1146	80		20		0.995493
1227	20			80	0.995493
1228		20	80		0.995493
1230			80	20	0.995493
1231		80		20	0.995493
1334	33		66		0.997452
1565	14	85			0.993533
1568	85		14		0.993533
1569			14	85	0.993533
1570			14	85	0.993533
1599		85		14	0.993533
1600		85		14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain