SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene27848

Length: 1601 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene27848 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam01657, DUF26, Domain of unknown function DUF26	-	-	4.0e-14	43%
FL-Next	Isoform 2 of Cysteine-rich repeat secretory protein 60 OS=Arabidopsis thaliana GN=CRRSP60	-	-	0.0	40%
Blast2go	cysteine-rich repeat secretory protein 15-like	-	-	0.0	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	60%

Source	InterPros	Term	Type	e value	Identity
Sma3	Gnk2-homologous domain	IPR002902	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q0WPN8-2

Fln msg:

Fln protein: MAMCLRVFWLIAPVVFLGLICARPADSQTFVYEGCSQEQYSSGSNYENNLNSLLGTLLRQASSTDYYNATAGSGGDAVYGLYDCRGDLGSDDCANCIKNAMSQISTVCLQTRGARIQLDGCFMHYDRINFFGQADTSFIYKTCSTTMGSDTNFYTHLSTMLSSLMTASASGDSNGFRVTTAGDSTTGFVHGLAQCEGDLSVSDCNNCMNAAVQKLKDACGNAVSGQVYLGKCYARYAQDMFYRDSSGNDHSSSDNGDDAGKTVAIIIGLLAGVALIVVFLSFLRQVFKQDHKG*

Protein Length: 295

Fln nts: TGTCGTATTCGACTACTTTTCCATGGCTAGAATCCGGAATGTGGCCCATTAATTACCAAAGTTTTCTGCTCCGCCTGTGGAGTCGATTGGAAAATCCATGGGCGTCAGAGCGTCTACGGCTCGCTTGACTGCTGACCACTCAGAGCTTGTTCCGTCAATAATGCACCCTCCTGCGCATCATAAATTCAATGCCTCTGTGGGCTCTTCTTGATTGAAGCATCGGGCTGTTTTTTCGTGTTGGCGTTTTTGAAAGCAGAGTCTGCTGCATTTTACAGTGCGAAGAAGAGGAGGGGGAGGATTCAGAGAGAATATTATTATA_-_ATGGCAATGTGCCTGCGTGTGTTTTGGCTTATAGCGCCTGTGGTATTTTTGGGTCTGATTTGTGCACGGCCTGCAGATTCTCAGACCTTCGTATACGAGGGATGTTCGCAGGAGCAGTACAGCTCCGGCAGTAACTACGAGAATAATCTGAATTCGCTTCTCGGGACTCTTCTCAGGCAAGCCTCCAGCACGGATTACTACAATGCCACCGCGGGTTCCGGGGGCGACGCGGTCTACGGGCTGTATGACTGCAGGGGCGACCTGGGTAGCGACGATTGCGCGAATTGTATCAAGAACGCCATGTCGCAGATTTCTACGGTCTGCCTTCAAACCCGCGGGGCTCGAATTCAGCTCGATGGCTGCTTCATGCACTATGACAGAATCAATTTCTTCGGCCAGGCGGATACTAGCTTTATCTACAAGACCTGCAGCACCACTATGGGCTCCGACACCAATTTCTACACCCATCTCAGTACGATGCTCAGTAGTTTGATGACGGCGAGCGCCTCCGGCGACAGTAACGGGTTTCGGGTCACGACGGCCGGGGACTCAACGACGGGGTTCGTTCATGGGCTTGCGCAGTGTGAGGGCGATCTGTCAGTGTCTGACTGCAACAACTGCATGAATGCGGCCGTGCAGAAGCTGAAGGACGCGTGTGGGAATGCTGTGTCTGGCCAGGTTTATCTCGGCAAATGCTATGCGCGGTATGCGCAGGACATGTTTTACCGCGACTCTTCTGGTAACGATCATTCGAGCAGTGATAATGGCGACGATGCTGGAAAAACAGTGGCAATTATCATTGGGCTTCTTGCTGGAGTTGCACTCATTGTTGTTTTCCTCTCCTTTCTGAGACAGGTTTTCAAGCAGGACCATAAAGGATGA___CGTCGCGTAATCATGACACGCTGATCGGCCGCCTGTATCGCGTCGAATCTGAAGGCCAACAAAAGGAGGGAAGGAGGGAAGGTGCAGAGCATGATTCCATCGAAATTTCTAGAGGGTTGTTGAGAATTATTATTATTCTGGTTGTTGAGAATTATTGTGCATACTGAGTGGATGTAATTGACCCACCAACTTAAATTAAATTAATGGGCCACTTGCTCCGCATGGTCCACCCGTTGTACGCCTTAGCAATCATCACTCAATTTTTATTTCTCCGTTCTGCGATAAATTCAACTTATCTTCACGTAATGTCGCATTCTGAGTTGTTAAAATAAAATTCAAAGCAAATCGCGTGAAGCATCCCGTGCGCCTTTGCCGGTATTGAATTGACAGAGAGATCGAA

Fln Alignment:

Contig27848___LRVFWLIAPVVFLGLICARPADSQTFVYEGCSQEQYSSGSNYENNLNSLLGTLLRQASSTDYYNAT--AGSGGDAVYGLYDCRGDLGSDDCANCIKNAMSQISTVCLQTRGARIQLDGCFMHYDRINFFGQADTSFIYKTCSTTMGSDTNFYTHXXXXXXXXXXXXXSGDSNGFRVTTAGDSTTGFVHGLAQCEGDLSVSDCNNCMNAAVQKLKDACGNAVSGQVYLGKCYARYAQD
Q0WPN8-2_____________LSIFFFLIAATAPSLSSATSA-TDTFVFGGCSQQKFSPASAYESNLNSLLTSLVNSATYSSYNNFTIMGSSSSDTARGLFQCRGDLSMPDCATCVARAVSQVGPLCPFTCGGALQLAGCYIKYDNISFLGQEDKTVVLKKCGSSEGYNTDGISRRDAVLTELV--------NGGGYFRAGGS--GDVQGMGQCVGDLTVSECQDCLGTAIGRLKNDCGTAVFGDMFLAKCYARYSTD

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
1224	64			35	1.0
1234	88			3	0.999079
1332	42	57			1.0
1381		62		37	1.0
1382		12	87		0.992554
1390	71	28			1.0
1391	71	28			1.0
1392		28		71	1.0
1395	71			28	1.0
1405	40			60	1.0
1490	75	25			0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
264	275	AAT AAT AAT AAT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain