SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene27784

Length: 1400 nt

Origin of reads: Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene27784

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Thioredoxin reductase n=2 Tax=Picea sitchensis RepID=A9NXV4_PICSI	-	-	89%
FL-Next	sp=Thioredoxin reductase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	thioredoxin reductase	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Thioredoxin-disulfide reductase.	EC:1.8.1.9	-	0.0	89%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Pyrimidine metabolism	00240		0.0	89%
Blast2go	Selenocompound metabolism	00450		0.0	89%

Source	GOs	Term	Type	Identity
Blast2go	seed development	GO:0048316	Biological Process	89%
Blast2go	cell growth	GO:0016049	Biological Process	89%
Blast2go	cell redox homeostasis	GO:0045454	Biological Process	89%
Blast2go	thioredoxin biosynthetic process	GO:0042964	Biological Process	89%
Blast2go	pollen germination	GO:0009846	Biological Process	89%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	89%
Blast2go	thioredoxin-disulfide reductase activity	GO:0004791	Molecular Function	89%
Blast2go	cytosol	GO:0005829	Cellular Component	89%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	89%
Blast2go	mitochondrial matrix	GO:0005759	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	IPR013027	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, class-II, active site	IPR008255	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain	IPR001327	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, class-II	IPR000103	-	-
Sma3	Thioredoxin reductase	IPR005982	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NU83

Fln msg: atg_distance in limit (1-15): atg_distance = 5,

Fln protein: MRTATCIVGSGPAAHTAAIYTARAELKPILFEGWMANGIAPGGQLTTTTDVENFPGFPQGIMGMDLTEKFKEQSLRFGTRVFTETVVRLDLSVRPFRLYTDTKQVDADTVIIATGAVAKRLDFPGAGEGEDGFWNKGISACAVCDGAAPIFRNRPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQKRALDNPKIEVIWNTEVLKAFGNERGLLSGLNLRNIVKNEESSLEVSGLFFAIGHEPATKFLEGQLELDSDGYIVTNPGTTQTSISGVFAAGDVQDKKWRQAITAAGTGCMAALEAEHFLQEVGVQEGKYSSSL*

Protein Length: 331

Fln nts: GGGGAGGCAGAGTTGGAAAGG_-_ATGAGAACGGCCACATGTATAGTAGGGAGCGGACCGGCGGCGCACACGGCTGCCATATACACCGCGCGGGCGGAGCTGAAGCCCATTCTCTTCGAAGGATGGATGGCCAACGGAATCGCCCCCGGCGGCCAACTCACGACTACTACTGACGTAGAAAACTTCCCAGGGTTCCCACAGGGGATAATGGGGATGGACTTGACAGAGAAATTCAAGGAGCAGAGTCTCCGTTTCGGGACGCGGGTTTTCACGGAGACAGTTGTGCGCCTCGATTTGTCTGTGAGGCCATTCAGGCTTTACACGGACACAAAGCAGGTGGACGCCGATACTGTTATCATTGCCACAGGGGCGGTGGCAAAGCGCCTGGATTTTCCGGGTGCCGGCGAGGGAGAAGACGGGTTCTGGAACAAGGGCATCTCCGCCTGCGCCGTTTGCGATGGCGCCGCTCCCATTTTCCGCAACCGACCGCTGGCGGTGATCGGGGGCGGAGACTCTGCCATGGAGGAGGCGAACTTTTTGACTAAGTACGGTAGCAAAGTTTACATCATTCACAGGCGGGATGCCTTCAGGGCCAGCAAGATCATGCAGAAGAGGGCGCTGGATAACCCCAAGATCGAGGTCATATGGAATACGGAGGTCCTCAAAGCTTTTGGGAACGAGAGAGGCTTGCTCAGTGGACTCAATCTGCGGAACATAGTGAAAAATGAGGAGTCGTCGTTGGAAGTGTCAGGGCTGTTCTTCGCCATCGGGCATGAGCCGGCCACAAAGTTTCTGGAGGGGCAGTTGGAGTTGGACTCAGACGGTTACATTGTGACAAATCCTGGAACCACTCAGACGAGTATATCGGGGGTTTTCGCCGCCGGAGATGTTCAGGACAAGAAATGGCGCCAAGCCATCACCGCTGCTGGCACAGGATGCATGGCAGCACTAGAAGCCGAGCACTTTTTACAGGAGGTAGGGGTACAAGAGGGCAAGTATAGTTCATCGCTTTAG___GTGGACACGGGTGATATTTACAGTTCCAAACAGAAGTCTTCTTTTTCCGTACTCTCCATAGAACACTCTTCTATTCAGCTTAGTTGTGGGTCTGAATTTTACTATTAACGCTATATGCTATATAACAGCATCAAATGACCCTTCCCATTTTTCCCCATGGAGGTATTTATTCACTTTGTACTATGTTATTTTTATGAGAAGAGTCCGGATTACCTTTTCCATTGAAGAGATGAGTCCGGATTACCTTTTCCATTGGAGAGATGTTTATATTATTTTAAGTAGCGTGTCTTGAATTTTTCGATATGTTTACTTAATTATAAATGGCTAAACTTTGTTATTATACGCGTTGAATTTAAAGTCCATATTCTAAATGGCCGACATTGTTAATT

Fln Alignment:

Contig27784___GEAELERMRTATCIVGSGPXXXXXXXXXXXXELKPILFEGWMANGIAPGGQLTTTTDVENFPGFPQGIMGMDLTEKFKEQSLRFGTRVFTETVVRLDLSVRPFRLYTDTKQVDADTVIIATGAVAKRLDFPGAGEGEDGFWNKGISACAVCDGAAPIFRNRPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQKRALDNPKIEVIWNTEVLKAFGNERGLLSGLNLRNIVKNEESSLEVSGLFFAIGHEPATKFLEGQLELDSDGYIVTNPGTTQTSISGVFAAGDVQDKKWRQAITAAGTGCMAALEAEHFLQEVGVQEGKYSSSL
A9NU83_______________GEVELERMRVATCIVGSGPAAHTAAIYTARAELKPILFEGWMANGIAPGGQLTTTTDVENFPGFPQGIMGMDLTEKFKEQSLRFGTRVFTETVVRMDLSVRPFRLYTDTKQVDADTVIIATGAVAKRLDFPGGGEGEDGFWNKGISACAVCDGAAPIFRNRPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQKRALDNPKIEVIWNAEVLKASGNERGLLSGLDLRNTVTGEASVLEVFGLFFAIGHEPATKFLEGQLELDTDGYIVTKPGTTQTSIPGVFAAGDVQDKKWRQAITAAGTGCMAALEAEHFLQEIGAQEGKYSSLL

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
840		87	12		0.992554
842		12	87		0.992554
844	87			12	0.992554
845	87		12		0.992554
846	12	87			0.992554
852	87			12	0.992554
854	87		12		0.992554
857	87			12	0.992554
860	87	12			0.992554
861	12			87	0.992554
862	87	12			0.992554
866	12		87		0.992554
963		12		87	0.999964
965		11		88	0.999952
966			11	88	0.999952
978		5	85	10	0.999793
982	85	5			0.999793
985	85	10		5	0.999793
988	4	9	80	4	0.999537
993	90			9	0.999872
1324	10			90	0.90298
1325	90	10			0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain