SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene27776

Length: 2904 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene27776
ATGATGAAGAAGAACTTTTGGCAGGCATAGTGGATGATTTTGACAAGAGTGGTCTGTTCGTCCAGATGGAAGAATCAGAAGAATATGATCTGTTTAGCAGTGGAGGTGGAATGGAACTAGATTCAGATTCTCTAGAAAATTTGAATGTAAAAAATAACAATGCAATATCAGATTATATTACTGGTGGTGGTGCTGGTCACTCTGGTGTTTCAAATGTGCCTGCGACAATTGTGGGGGAACATCCTTATGGTGAACATCCCTCTAGAACACTATTTGTGCGGAATATTAACAGTAACGTGGAGGATTCAGAGCTCCGTACTTATTTTGAGCATTATGGTGACATCAGGACGCTCTATACTGCATGCAAGCATCGTGGGTTTGTAATGATATCTTACTATGATATTCGTGCTGCTCGGAATGCAATGCGGGCCCTTCAAAACAAGCCACTACGAAGGCGGAAACTTGACATTCATTTTTCTATTCCAAAGGACAATCCTTCTGATAAAGATATAAACCAAGGAACACTCGTTGTTTTTAACTTGGATCCATCTGTGTCAAATGATGACCTTCGGCGAATTTTTGGAGCTTATGGAGAAGTCAAAGAGATAAGGGAAACCCCCCACAAACGACATCACAAGTTTATTGAGTTTTATGATGTAAGAGCAGCTGAAGAAGCACTTCGAGCTCTAAACAAGAGTGACATTGCTGGCAAGCGTATCAAGCTTGAACCTAGCCGTCCTGGTGGAGCAAGGCGAAGCTTAATGCAGCATTTGAGCCAGGAGCTAGAGCAGGATGTTGGTTCACCATTGATGAATTCACCTCCAGGGCCTTGGGAATACTTCAGCAGTCCTAGTGAAAATGGTTCATTGCAAAGCATAACCTATTCACGTGGATTTGGAAATGTGAATCATCCAGTTAACAAACCATTGCCAGCATTTGGTGCAAACCTTCCACCTTTCCCATCAACTAAAAGTGGAGTTATCAGCAATGACCTGGGAAGAGCTAAACAGATTGAACAAGTATCTTCCATAAACAGTTTTGGAAAGTCAGGCCAGCTCCATCAGTCTCATTCGTTTCCCGATTATGACAGTGGTATGATGCCAGTAATGCATTATAATTCTGCTGGGGCTGTACCAGTACCACGAAGCTCCACCCCTTTTGGAAATCATGAAGCAATTGGAACAGGAAGTAGCGGGTCATTTGGCCACCTAAGCTCAAGCTCAGGTGTTAATGGTACGTTGTCAGGTCATCAATATTTATGGGGCAGCCCAAGTCCTTATTCTCATCATATTACATGGCCCGGACCACCACTTGGACACTCTGTAAATGCTAACGGGTCACAGCCTTACTCTGGGAGACAAAGCCCTTACATAAGTTCAGCTATAGCACCACATCATCATCATGTCGGTTCTGCTCCCTCAGGCGAGCCGTCACTAGATAGACACTTTAGTTACCTGACAGAGACACCTGATATGACTTTTGTAAATCCTAGCTCACTTGGATCGATGAGTTGTGCCAATGGAAGCCCTGTAATAAGTATTGGTGCACATGCTGTTTTGAATGCTGGGGGTGTTTCTATCTCAAACAATAGCAATATTGAATGTGGTTCTCCAATTGGGGTGTTGTCCCCACAGCGAAAAAGCCGAATGTTTTCTGGTGGAGGGTTTACTGGTTCAATTGCAAACTTCTCAGAAGGATTAAATGAACGTGGAAGAAGCCGACGTGGGGACAATAACACAAGTCAAGCAGATAATAAGAAGCAATATCAACTAGACCTGGACAAAATCATGCGTGGTGAAGATGCACGGACAACAATCATGATCAAGAATATCCCAAACAAGTATACTTCAAAGATGCTGTTGGCTACTATTGATGAAAATCATCGCGGGACATATGATTTTCTGTATTTGCCGATTGATTTTAAGAATAAATGCAATGTTGGTTATGCATTCATAAATATGACTTCTCCGTCTCATATCATTCCTTTTTATCAGGGATTTAATGGAAAGAAATGGGAAAAGTTCAACAGTGAGAAGGTTGCATCTCTAGCATATGCTCGAATTCAGGGAAAAGCTGCTCTTATAGCACATTTTCAGAATTCTAGCCTGATGAATGAAGATAAGCGGTGCCGACCTATTCTTTTTCAACCTGGGGCAGCAGGAACTGGGGATCAGGAAACATTCGCAATGGGACCAGATGTTAAGGTCCATCCTTCAGATTACTTGGCTGATGGAAATGCACGTGAAAGTCTAATAATTGCAAATAAGGATGATTCTGTATCAAATAGTGACAAGATTCTTAATGATGCCGACTTTTATGAAGAATTGACGAGCGAAATAAGCAAGTTGCTCGATCATTCTTGACATCAAAACTGTGTGTATAAATAAAGAGTGCCTTGTTAATTATAGGCTTCTTGTAGGATGTACATTTCGAATTGTTTTTTCGTCGTGACCTTGGCTTCACTCACTTGTTACAGTGGCCATCTTTTGCAGCAATGGTGCTGGAAGACTGATTTTTAGTGGTCTCATTTTGCTTCATCAAAAGTGCAGAGACCTTTGTTCATTTCTGTAATTATAGAGAGGCAACATGATTAATTAGTTTGTGTTGAGAAGCCGGCAATATACTCGGGTAAATCGACAACTACAAAGGACTTGTGGTAAACATCAAGTCTCCTGCTGAATCGAGCCTGAGCAAGTGTACAGGTGAACTGAGCTATCCAGGTGGTTTTATTTGGCTGGTAATTGCCATAGTTTATGTAAATCTATGTATCTATCAACATTTACCTCAACGGTAAATAAATTGTTGGAAGTCTGTTATGAAACTCATTTATTCTTGTGTGGTGTTTTAAAATACCCTGAATAGTGTTTTCACCGTTAACTGTGTAATTTATGCTAATTTTCTAAC

Ace file of the UniGene sp_v2.0_unigene27776

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RNA-binding protein MEI2, putative; 36123-32976 [Arabidopsis thaliana]	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	protein mei2-like 2-like	-	-	70%

Source	InterPros	Term	Type	Identity
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	RNA recognition motif 2	IPR007201	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKG9

Fln msg: your sequence is shorter than subject: 787 - 892

Fln protein: DEEELLAGIVDDFDKSGLFVQMEESEEYDLFSSGGGMELDSDSLENLNVKNNNAISDYITGGGAGHSGVSNVPATIVGEHPYGEHPSRTLFVRNINSNVEDSELRTYFEHYGDIRTLYTACKHRGFVMISYYDIRAARNAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNDDLRRIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEEALRALNKSDIAGKRIKLEPSRPGGARRSLMQHLSQELEQDVGSPLMNSPPGPWEYFSSPSENGSLQSITYSRGFGNVNHPVNKPLPAFGANLPPFPSTKSGVISNDLGRAKQIEQVSSINSFGKSGQLHQSHSFPDYDSGMMPVMHYNSAGAVPVPRSSTPFGNHEAIGTGSSGSFGHLSSSSGVNGTLSGHQYLWGSPSPYSHHITWPGPPLGHSVNANGSQPYSGRQSPYISSAIAPHHHHVGSAPSGEPSLDRHFSYLTETPDMTFVNPSSLGSMSCANGSPVISIGAHAVLNAGGVSISNNSNIECGSPIGVLSPQRKSRMFSGGGFTGSIANFSEGLNERGRSRRGDNNTSQADNKKQYQLDLDKIMRGEDARTTIMIKNIPNKYTSKMLLATIDENHRGTYDFLYLPIDFKNKCNVGYAFINMTSPSHIIPFYQGFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFQPGAAGTGDQETFAMGPDVKVHPSDYLADGNARESLIIANKDDSVSNSDKILNDADFYEELTSEISKLLDHS*

Protein Length: 788

Fln nts: ATGATGAAGAAGAACTTTTGGCAGGCATAGTGGATGATTTTGACAAGAGTGGTCTGTTCGTCCAGATGGAAGAATCAGAAGAATATGATCTGTTTAGCAGTGGAGGTGGAATGGAACTAGATTCAGATTCTCTAGAAAATTTGAATGTAAAAAATAACAATGCAATATCAGATTATATTACTGGTGGTGGTGCTGGTCACTCTGGTGTTTCAAATGTGCCTGCGACAATTGTGGGGGAACATCCTTATGGTGAACATCCCTCTAGAACACTATTTGTGCGGAATATTAACAGTAACGTGGAGGATTCAGAGCTCCGTACTTATTTTGAGCATTATGGTGACATCAGGACGCTCTATACTGCATGCAAGCATCGTGGGTTTGTAATGATATCTTACTATGATATTCGTGCTGCTCGGAATGCAATGCGGGCCCTTCAAAACAAGCCACTACGAAGGCGGAAACTTGACATTCATTTTTCTATTCCAAAGGACAATCCTTCTGATAAAGATATAAACCAAGGAACACTCGTTGTTTTTAACTTGGATCCATCTGTGTCAAATGATGACCTTCGGCGAATTTTTGGAGCTTATGGAGAAGTCAAAGAGATAAGGGAAACCCCCCACAAACGACATCACAAGTTTATTGAGTTTTATGATGTAAGAGCAGCTGAAGAAGCACTTCGAGCTCTAAACAAGAGTGACATTGCTGGCAAGCGTATCAAGCTTGAACCTAGCCGTCCTGGTGGAGCAAGGCGAAGCTTAATGCAGCATTTGAGCCAGGAGCTAGAGCAGGATGTTGGTTCACCATTGATGAATTCACCTCCAGGGCCTTGGGAATACTTCAGCAGTCCTAGTGAAAATGGTTCATTGCAAAGCATAACCTATTCACGTGGATTTGGAAATGTGAATCATCCAGTTAACAAACCATTGCCAGCATTTGGTGCAAACCTTCCACCTTTCCCATCAACTAAAAGTGGAGTTATCAGCAATGACCTGGGAAGAGCTAAACAGATTGAACAAGTATCTTCCATAAACAGTTTTGGAAAGTCAGGCCAGCTCCATCAGTCTCATTCGTTTCCCGATTATGACAGTGGTATGATGCCAGTAATGCATTATAATTCTGCTGGGGCTGTACCAGTACCACGAAGCTCCACCCCTTTTGGAAATCATGAAGCAATTGGAACAGGAAGTAGCGGGTCATTTGGCCACCTAAGCTCAAGCTCAGGTGTTAATGGTACGTTGTCAGGTCATCAATATTTATGGGGCAGCCCAAGTCCTTATTCTCATCATATTACATGGCCCGGACCACCACTTGGACACTCTGTAAATGCTAACGGGTCACAGCCTTACTCTGGGAGACAAAGCCCTTACATAAGTTCAGCTATAGCACCACATCATCATCATGTCGGTTCTGCTCCCTCAGGCGAGCCGTCACTAGATAGACACTTTAGTTACCTGACAGAGACACCTGATATGACTTTTGTAAATCCTAGCTCACTTGGATCGATGAGTTGTGCCAATGGAAGCCCTGTAATAAGTATTGGTGCACATGCTGTTTTGAATGCTGGGGGTGTTTCTATCTCAAACAATAGCAATATTGAATGTGGTTCTCCAATTGGGGTGTTGTCCCCACAGCGAAAAAGCCGAATGTTTTCTGGTGGAGGGTTTACTGGTTCAATTGCAAACTTCTCAGAAGGATTAAATGAACGTGGAAGAAGCCGACGTGGGGACAATAACACAAGTCAAGCAGATAATAAGAAGCAATATCAACTAGACCTGGACAAAATCATGCGTGGTGAAGATGCACGGACAACAATCATGATCAAGAATATCCCAAACAAGTATACTTCAAAGATGCTGTTGGCTACTATTGATGAAAATCATCGCGGGACATATGATTTTCTGTATTTGCCGATTGATTTTAAGAATAAATGCAATGTTGGTTATGCATTCATAAATATGACTTCTCCGTCTCATATCATTCCTTTTTATCAGGGATTTAATGGAAAGAAATGGGAAAAGTTCAACAGTGAGAAGGTTGCATCTCTAGCATATGCTCGAATTCAGGGAAAAGCTGCTCTTATAGCACATTTTCAGAATTCTAGCCTGATGAATGAAGATAAGCGGTGCCGACCTATTCTTTTTCAACCTGGGGCAGCAGGAACTGGGGATCAGGAAACATTCGCAATGGGACCAGATGTTAAGGTCCATCCTTCAGATTACTTGGCTGATGGAAATGCACGTGAAAGTCTAATAATTGCAAATAAGGATGATTCTGTATCAAATAGTGACAAGATTCTTAATGATGCCGACTTTTATGAAGAATTGACGAGCGAAATAAGCAAGTTGCTCGATCATTCTTGA___CATCAAAACTGTGTGTATAAATAAAGAGTGCCTTGTTAATTATAGGCTTCTTGTAGGATGTACATTTCGAATTGTTTTTTCGTCGTGACCTTGGCTTCACTCACTTGTTACAGTGGCCATCTTTTGCAGCAATGGTGCTGGAAGACTGATTTTTAGTGGTCTCATTTTGCTTCATCAAAAGTGCAGAGACCTTTGTTCATTTCTGTAATTATAGAGAGGCAACATGATTAATTAGTTTGTGTTGAGAAGCCGGCAATATACTCGGGTAAATCGACAACTACAAAGGACTTGTGGTAAACATCAAGTCTCCTGCTGAATCGAGCCTGAGCAAGTGTACAGGTGAACTGAGCTATCCAGGTGGTTTTATTTGGCTGGTAATTGCCATAGTTTATGTAAATCTATGTATCTATCAACATTTACCTCAACGGTAAATAAATTGTTGGAAGTCTGTTATGAAACTCATTTATTCTTGTGTGGTGTTTTAAAATACCCTGAATAGTGTTTTCACCGTTAACTGTGTAATTTATGCTAATTTTCTAAC

Fln Alignment:

Contig27776___DEEELLAGIVDDFDKSGLFVQMEESEEYDLFSSGGGMELDSDSLENLNVKNNNAISDYITGGGAGHSGVSNVPATIVGEHPYGEHPSRTLFVRNINSNVEDSELRTYFEHYGDIRTLYTACKHRGFVMISYYDIRAARNAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNDDLRRIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEEALRALNKSDIAGKRIKLEPSRPGGARRSLMQHLSQELEQDVGSPLMNSPPGPWEYFSSPSENGSLQSITYSRGFGNVNHPVNKPLPAFGANLPPFPSTKSGVISNDLGRAKQIEQVSSINSFGKSGQLHQSHSFPDYDSGMMPVMHYNSAGAVPVPRSSTPFGNHEAIXXXXXXXXXXXXXXXXVNGTLSGHQYLWGSPSPYSHHITWPGPPLGHSVNANGSQPYSGRQSPYISSAIAPHHHHVGSAPSGEPSLDRHFSYLTETPDMTFVNPSSLGSMSCANGSPVISIGAHAVLNAGGVSISNNSNIECGSPIGVLSPQRKSRMFSGGGFTGSIANFSEGLNERGRSRRGDNNTSQADNKKQYQLDLDKIMRGEDARTTIMIKNIPNKYTSKMLLATIDENHRGTYDFLYLPIDFKNKCNVGYAFINMTSPSHIIPFYQGFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFQPGAAGTGDQETFAMGPDVKVHPSDYLADGNARESLIIANKDDSVSNSDKILNDADFYEELTSEISKLLDHS
B8LKG9_______________DEEELLAGIMDDFDKSGLFSQTEELEEYDLFSSGGGMELDSDSQESLNVKNNNAISDYTAGGGTGHPGVSNVPVTIVGEHPYGEHPSRTLFVRNINSNVEDSELRTYFEHYGDIRTLYTACKHRGFVMISYYDIRAARNAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNDDLRRIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEEALRALNKSDIAGKRIKLEPSRPGGARRSLMQHLSQELEQDVGSPFMNSPPGPWEYFSSPSENGSLQSITYSRGFGNMNHPVNKPLPGFGASLPPFPSTKSGIVSNDLGRAKQIEQVPSINSFGKSGQLHQSHSFPDYDSGMMPVMHYNSAGAVPVPRSSTPFGHHEGIGTASSGSFGHLSSSSGVNGTLSGHQYLWGSPSPYSHHITWPGPPLGHSVNASGSQPYSGRQSPYVSSAIAP-HHHVGSAPSGEPSLDRHFSYLTETSDMPFVNPSSLGSMSCSNGSPVISIGAHGVLNAGGVAISNNSNIECGSPIGVLSPQRKSRMFSSGGFTGSIANFSEGLNERGRSRRGDNSTSQADNKKQYQLDLDKIMRGEDARTTIMIKNIPNKYTSKMLLATIDEHHRGTYDFLYLPIDFKNKCNVGYAFINMTSPSHIIPFYQAFNGKKWEKFNSEKVASLAYARIQGKTALIAHFQNSSLMNEDKRCRPILFQPGAAGTGDQETFPMGPDVKVHPSENLADGNARESPTIANKDDSVPKSDKIPNDADFYEELTSEISKLLDHS

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
412	33		66		0.997452
416		66		33	0.997452
1014	14			85	0.993533
1017	85		14		0.993533
1018	85		14		0.993533
1167	88		11		0.923564
1385	75		25		0.996473
1512	16		83		0.994512
1516			16	83	0.994512
1912	10		90		0.90298
1913	10	90			0.90298
1914		90		10	0.90298
1984		10		90	0.90298
2224	11	88			0.923564
2226			11	88	0.923564
2305		28		71	1.0
2364	14		85		0.993533
2376			85	14	0.993533
2509	87	12			0.992554
2510	87			12	0.992554
2515		12	87		0.992554
2827		15		84	0.999986
2837		22		77	0.999999
2879			25	75	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
1392	1403	CAT CAT CAT CAT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain