SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene27772

Length: 1494 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene27772

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Non-specific lipid-transfer protein n=2 Tax=Glycine max RepID=C6T196_SOYBN	-	-	2.0e-15	37%
FL-Next	sp=Non-specific lipid-transfer protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%
Blast2go	protein	-	-	1.09571e-17	52%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQX9

Fln msg:

Fln protein: MAMERSDVILIIPILVLIMVGPTNSVQTTSTSSLGNDCVNQLFGLYPCLGFVTNGKVNTVSPQCCSALEATVNANVMCLCLLFTNNSEILGLSINQTQALLLPTLCKIVVPPVSTCKNVANDVLGAPVNDSPPVPKNLASGNRRLSPEDIHMSATQSVTSGTTSKTFEEPIKGKS*

Protein Length: 177

Fln nts: TCAAAGTCTAGAGGACACTTCTAGGTTTCTGTATGTTTTCGGTTGTTATTTAATGAGAACATTCCAAGTCCAGGTAACACTCTAGATTGTTGAATGTTTTCAGAAGTTGTTAGGTTGTTATTTAAAGATAAACTATGATAATTATATTCTCGTAGTGAATAAATATAAATATAATTTAAAGAACTATTAAAACTTAAATAACAGTCATGCAACCTTAGTTAACTTAAGATGCCAAAGAAACAAAAAGAGTAAGAATGAACTTGAACACCGAAACATGCAAGTAATTCCTGTTAACTCATCATCCATTCACCTTAACTCAACTTAACATCAACAACGAACTTTAAGTAACAAATGAAATGGCTCCTCATTCCACACAAGTCTATTCTACTCGCCTCGTTCAACCCAAGTGTTCAATTGCGTGCAGAGAAACCATTCCAGTAGTGTGTTATACATTAGAACAGGTGCTTCACCGAAAGTTACACTAAAGAAATATGGTTTATAAATCTTTTTATTGTTAAATTAGGAAACTAAGCTGAGAGTATTTTTTGCATTCAAGTGCTAGTTAAGTATAATTTCTGATAGATTTATCTAGCGTAACAAATGTTAAGTCTCTACCATTTCTCTTTATTTATAGTCTCTACCATTTCTCTTTATTTATAGTCTCTACCATTGTGTTTCAAATACTTACATTTACGGTGCAGGGAAACATTTTTTTAGATATTTGTGTTTAAGGTGCGCGCAGACATTTCA_-_ATGGCAATGGAAAGAAGCGATGTTATTCTCATAATCCCCATTTTGGTCCTGATTATGGTTGGGCCAACAAATTCAGTGCAGACTACCTCTACCTCTAGTCTTGGAAATGATTGTGTAAACCAGTTATTCGGCTTATATCCCTGCCTTGGTTTTGTCACCAATGGAAAAGTCAACACCGTCAGCCCCCAGTGTTGCTCTGCCCTTGAGGCAACAGTGAATGCCAATGTCATGTGCCTATGCCTCCTCTTTACCAATAACAGTGAGATTCTTGGACTTTCAATTAATCAAACACAAGCTCTCCTCCTCCCTACTCTCTGCAAAATTGTTGTGCCGCCTGTTAGCACATGCAAGAATGTGGCAAATGATGTCCTCGGTGCGCCAGTTAATGATTCTCCTCCAGTTCCAAAAAACCTAGCCAGTGGAAATCGAAGACTTTCACCAGAGGATATTCATATGTCTGCAACTCAATCAGTTACATCTGGAACTACATCAAAGACTTTTGAAGAACCTATCAAAGGGAAGAGTTGA___TATGTTTTAGAATCATGGAACGCAATTTTTGTGATTTGCATGTAATAAGTTATATTCTTAGCCCTTTTCATTTGGCTAAGTTTGATAACAAAATATTTGTTGAATTTTAAGCCTAGGTATTAATTTTGGAGGCACGCTTCTGTTTGTGTTAAGATCATATCTGTTTCATAATGATATGTAAATCAATTTTTCCATCAACTGCGTCCATGCTGGAGT

Fln Alignment:

Contig27772___SVQTTSTSSLGNDCVNQLFGLYPCLGFVTNGKVNTVSPQCCSALEATVNANVMCLCLLFTNNSEILGLSINQTQALLLPTLCKIVVPPVSTCKNVANDVLGAPVNDSPPVPKNLASGN
C0PQX9_______________AVTDIAVAQAPSGCSSALVSLAPCIGYVT-GSAPKPSDRCCSGLTNVVNTNPVCLCQLFSGGNNV-GVNVNQTLALAMPAACKVSTPPLSSCKAAGVPV---PPISSPPSPKVPSTGS

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
396			60	40	1.0
419	40		60		1.0
463		12		87	0.992554
509			33	66	1.0
541	66			33	0.997452
638		66		33	0.997452
754	75		25		0.996473
787	40	60			1.0
790		80		20	0.995493
960	85		14		0.993533
989		12		87	0.992554
990	12		87		0.992554
1086		75	25		0.996473
1123		20	80		0.995493
1192	80	20			0.995493
1211	40	60			1.0
1289		9		81	0.999363
1302		50		50	1.0
1375		61		38	1.0
1452	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain