SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene27759

Length: 428 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene27759
GGAGTGTTTGCTCAAGCCCTACGCAATTTCGAAGAGAAGAAAGTATACGACCCTCAAACTCATGATATGAGACTGAGATATGAGTCTAACACCATTGAACATTGGAGAAACTCCCTTTCTCATGTTTCATCTTTGTCAGGTTTCGAGCTAGACGCGTTTAATGGAGACGAAGGGGACTTGGTTGATAAACTAGTAAATTATGTCTTGAGAAAGGTCAAAAGAAAACTAAATGTAGCCAGATATCCAACTGGGTTGGATGAAAAAGTGAGAGATTTTGAAAATAAAGTTTTATTGCAGCGGAATGAGCCTGGAAAACCTAGCGTTGTAGGGATCGTTGGGAGTGGTGGTGTAGGAAAAACAACCCTGGCCAAAGAACTCTTCAATAGGATGAGTTCAACTTACAGTAGATCCTGCTTTCTAACTGATGT

Ace file of the UniGene sp_v2.0_unigene27759 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative TIR/NBS/LRR disease resistance protein (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8J7_PINTA	-	-	75%
FL-Next	tr=Putative truncated TIR-NBS-LRR protein; Pinus monticola (Western white pine) (Strobus monticola).	-	-	57%
Blast2go	tir-nbs-lrr resistance protein	-	-	65%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: E9NZS7

Fln msg: Distance to subject end: 553 aas, your sequence is shorter than subject: 142 - 815

Fln protein: GVFAQALRNFEEKKVYDPQTHDMRLRYESNTIEHWRNSLSHVSSLSGFELDAFNGDEGDLVDKLVNYVLRKVKRKLNVARYPTGLDEKVRDFENKVLLQRNEPGKPSVVGIVGSGGVGKTTLAKELFNRMSSTYSRSCFLTD

Protein Length: 143

Fln nts: GGAGTGTTTGCTCAAGCCCTACGCAATTTCGAAGAGAAGAAAGTATACGACCCTCAAACTCATGATATGAGACTGAGATATGAGTCTAACACCATTGAACATTGGAGAAACTCCCTTTCTCATGTTTCATCTTTGTCAGGTTTCGAGCTAGACGCGTTTAATGGAGACGAAGGGGACTTGGTTGATAAACTAGTAAATTATGTCTTGAGAAAGGTCAAAAGAAAACTAAATGTAGCCAGATATCCAACTGGGTTGGATGAAAAAGTGAGAGATTTTGAAAATAAAGTTTTATTGCAGCGGAATGAGCCTGGAAAACCTAGCGTTGTAGGGATCGTTGGGAGTGGTGGTGTAGGAAAAACAACCCTGGCCAAAGAACTCTTCAATAGGATGAGTTCAACTTACAGTAGATCCTGCTTTCTAACTGATGT

Fln Alignment:

Contig27759___GVFAQALRNFEEKKVYDPQTHDMRLRYESNTIEHWRNSLSHVSSLSGFELD---AFNGDEGDLVDKLVNYVLRKVKRKLNVARYPTGLDEKVRDFENKVLLQRNEXXXXXXXXXXXXXXXXKTTLAKELFNRMSSTYSRSCFLTD
E9NZS7_______________GVYARSLSNLEKKR-----KHDNEPRYDSGTIENWRNALSQVADKSGFVLDLDLGFGGDEGKLLDQLVEVVLKKGKKKLDVARYPTGLGDLVKDFETKLSLQQH-GERVQFVGITGLGGAGKTTLAKELFNRKSSEYSKSCFLFD

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain