SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene27726

Length: 382 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene27726
CTAGCTTCGGGAGTCGTAAATTCTTTATACAGAGCTGGTGACTGACAACTACTTTGAAATGATGGAGTTGAACAGGATTCAACAGCCCCAGAATCTAGTACAGAAACTGAAGATGCTTCATTGAATGAGGGTTCTAGTCCTCAAGATTGCTCAGGAAAATCATCATTGCAATCTCCTTTTAAAGACAGCTCACCAGAAACAGTGTCACTGATGACCCGAGACAACTCCCATGGAAGACAATCTAGGGGCAATGGAGATCCTCTTCGCAGCATGCGCCTTACTTTAAAGTTAAAGGACTTCAATAAGAATGCAAAGGTGGATGGTGAAATAAATAAGGAATTGGAAGTATGGAATGAGTCTCTTCGAGCAGAAGCAGTTAAGT

Ace file of the UniGene sp_v2.0_unigene27726 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Phosphoprotein phosphatase, putative n=1 Tax=Ricinus communis RepID=B9RA78_RICCO	-	-	2.0e-11	38%
FL-Next	tr=Propyzamide-hypersensitive 1; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).	-	-	0.0	39%
Blast2go	dual specificity protein phosphatase family protein	-	-	2.46276e-15	58%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphoprotein phosphatase.	EC:3.1.3.16	-	2.46276e-15	58%

Source	GOs	Term	Type	e value	Identity
Blast2go	organelle organization	GO:0006996	Biological Process	2.46276e-15	58%
Blast2go	regulation of biological process	GO:0050789	Biological Process	2.46276e-15	58%
Blast2go	primary metabolic process	GO:0044238	Biological Process	2.46276e-15	58%
Blast2go	response to abiotic stimulus	GO:0009628	Biological Process	2.46276e-15	58%
Blast2go	macromolecule metabolic process	GO:0043170	Biological Process	2.46276e-15	58%
Blast2go	response to chemical stimulus	GO:0042221	Biological Process	2.46276e-15	58%
Blast2go	cellular metabolic process	GO:0044237	Biological Process	2.46276e-15	58%
Blast2go	binding	GO:0005488	Molecular Function	2.46276e-15	58%
Blast2go	phosphoprotein phosphatase activity	GO:0004721	Molecular Function	2.46276e-15	58%
Blast2go	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	2.46276e-15	58%
Blast2go	chloroplast	GO:0009507	Cellular Component	2.46276e-15	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7M2C4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 274 aas, your sequence is shorter than subject: 127 - 929

Fln protein: LASGVVNSLYRAGD*QLL*NDGVEQDSTAPESSTETEDASLNEGSSPQDCSGKSSLQSPFKDSSPETVSLMTRDNSHGRQSRGNGDPLRSMRLTLKLKDFNKNAKVDGEINKELEVWNESLRAEAVK

Protein Length: 128

Fln nts: CTAGCTTCGGGAGTCGTAAATTCTTTATACAGAGCTGGTGACTGACAACTACTTTGAAATGATGGAGTTGAACAGGATTCAACAGCCCCAGAATCTAGTACAGAAACTGAAGATGCTTCATTGAATGAGGGTTCTAGTCCTCAAGATTGCTCAGGAAAATCATCATTGCAATCTCCTTTTAAAGACAGCTCACCAGAAACAGTGTCACTGATGACCCGAGACAACTCCCATGGAAGACAATCTAGGGGCAATGGAGATCCTCTTCGCAGCATGCGCCTTACTTTAAAGTTAAAGGACTTCAATAAGAATGCAAAGGTGGATGGTGAAATAAATAAGGAATTGGAAGTATGGAATGAGTCTCTTCGAGCAGAAGCAGTTAAGT

Fln Alignment:

Contig27726___QDSTAPESSTETEDASLNEGSSPQ------DCSG--------KSSLQSPFKDSSPETVSLMTRDNSHGRQSRGNGDPLRSMRLTLKLKDFNKNAKVDGEINKELEVWNESLRAEAVK
D7M2C4_______________EDFSVPESPSQTHGHEVNHYPSPSKDRVHSDNSSDHSESDMQKSVPRTPNSENKEDASSPKSRESWHGRSSKG-GESLSSQRLASKLRDFHKFAKVDAESNKELDQWNETLRNEVMK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain