SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene27700

Length: 1644 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene27700

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	pfam04146, YTH, YT521-B-like domain	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	56%
Blast2go	yt521-b-like protein	-	-	64%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, CCCH-type	IPR000571	-	0.0	-
Sma3	YTH domain	IPR007275	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6HUJ7

Fln msg: your sequence is longer than subject: 422 - 370

Fln protein: MVDSSLTDCKQEPDAFEEQEALEEPGSANHRKCGKQPQRINQWRVKHLSNNIMINGASSEEGSLHSTRYFIIKSLSHRNIQMSIEKGIWATQVMNEPILEEAFHNSERVILIFSVNMSGYFQGYAQMMSPVGWKRENVWNESNNGTNPWGRTFKVRWLRLYNLPFQKTVHLKNPLNEYKPVKISRDCQELTQEIGEALCGLIDEGAEFEGKHKRKMAVRDSTLTKRLHRDYGSAMVDGNSMGGYSTSQGNWPIMPMLYPSAQHPPANPLERYNPSGGLLSNMTSGHLEEPKASTSRPPFAMERINDRHRERERPSGTDVNKERSRAGGNSRHGVDYLPEEDLLHMTYEEYLQKTCGNMSEYSGCPPTPGVWMGNGVDLTFPDDQYANYLANWYQNQNPMMAGNIYYGAPQIINTYPAIHHP*

Protein Length: 423

Fln nts: GAGAAAGACTTCGCCAGATGGAACCCCCAACGGAAAATAGCATCC_-_ATGGTTGATTCATCTCTGACTGACTGCAAGCAGGAACCAGATGCATTTGAAGAGCAAGAAGCGTTAGAAGAGCCAGGAAGTGCAAACCATAGGAAATGTGGCAAACAGCCCCAGAGAATTAATCAATGGAGAGTTAAGCATTTATCTAATAACATAATGATCAATGGCGCTTCTTCAGAAGAGGGAAGCTTGCATTCAACAAGATACTTCATAATTAAGAGTCTGAGCCATCGTAATATACAAATGTCAATTGAAAAGGGAATTTGGGCAACTCAAGTGATGAACGAGCCCATTTTAGAGGAAGCTTTCCATAATTCAGAAAGGGTCATTCTAATTTTTAGTGTCAATATGAGTGGATACTTCCAAGGATATGCCCAAATGATGTCTCCTGTTGGTTGGAAGAGGGAAAATGTTTGGAATGAATCAAATAATGGAACAAATCCATGGGGACGCACTTTCAAGGTGAGGTGGCTTCGTCTTTACAATTTACCATTCCAGAAGACGGTCCATCTGAAGAACCCATTGAATGAGTACAAGCCAGTGAAGATTAGTAGAGATTGCCAGGAGCTGACGCAGGAAATTGGAGAAGCTCTTTGTGGTCTTATAGATGAAGGAGCTGAATTTGAAGGAAAACATAAGCGCAAGATGGCTGTGAGAGATTCTACCCTTACAAAAAGGCTCCATAGAGATTATGGTAGTGCTATGGTTGATGGAAATTCCATGGGAGGATATTCAACATCTCAGGGAAATTGGCCTATAATGCCTATGCTGTATCCATCTGCACAGCACCCGCCTGCCAATCCACTTGAACGGTACAATCCTTCTGGCGGGTTGCTGTCAAATATGACTTCTGGACATTTGGAAGAACCAAAAGCTTCTACCTCAAGGCCACCATTTGCAATGGAGAGGATAAATGATAGGCACAGAGAGAGAGAGAGGCCTTCAGGAACAGATGTAAATAAAGAGCGATCTCGAGCTGGTGGGAATTCAAGGCATGGGGTTGATTATCTACCTGAGGAAGATCTTCTACATATGACATATGAAGAATATCTTCAAAAGACATGTGGGAACATGAGCGAGTATAGTGGTTGCCCGCCGACCCCCGGAGTATGGATGGGAAATGGTGTAGATCTTACGTTCCCAGATGATCAATATGCAAATTACTTGGCGAATTGGTATCAAAATCAGAATCCAATGATGGCGGGCAATATATACTATGGTGCTCCACAAATAATAAACACTTACCCTGCTATCCACCATCCTTAG___CATATAAGATCACCCGTGATTGTATTTCTGCTTTTGCAGATGTTAACAGAGATTTTTCTTCTTTTTTGTAGGAGGTCAGCAACAATTTTCTTGCTTTTCACACTCATAAAAATGTTGTAATCTATTAGTTCTTAGCATGGACGCCATTTCACTGGCATATATTTTATTGTTTTATTTTGTACATTGAAGAATTCTAATTTTTGCTTGGGACAGACGTTGATTTTGACTGTTCGTTTTGGCTGGGTGCTCTGAACTAATTTATTTCATGTGCTTTTGGCCAAGTTGTAAAATATATATTTTTTGTAATCCCATGTCCAATGAAGGGATTCTATA

Fln Alignment:

Contig27700___ASMVDSSLTDCKQEPDAFEEQEALEEPGSANHRKCGKQPQRINQWRVKHLSNNIMINGASSEEGSLHSTRYFIIKSLSHRNIQMSIEKGIWATQVMNEPILEEAFHNSERVILIFSVNMSGYFQGYAQMMSPVGWKRENVWNESNNGTNPWGRTFKVRWLRLYNLPFQKTVHLKNPLNEYKPVKISRDCQELTQEIGEALCGLIDEGAEFEGKHKRKMAVRDSTLTKRLHRDYGSAMVDGNSMGGYSTSQGNWPIMPMLYPS
F6HUJ7_______________ASVVDSSVTDWKHDMGNFDDPESSSYKANEDGYPSGPEEQRH--------SHTGMLNSSANKKGKLYSTRYFIIKSLNHHNIQLSMEKGIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSVGWRRDNVWSQGSGGNNPWGRSFKVKWLRLHDLPFQKTLHLKNPLNDYKPVKISRDCQELSQEIGEALCELLD-GKTDVGDNLRKNDFSGDDLPPRRPFMEPSCSLPGEE---YNLSSMHMTWTSMLYPS

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
1317		11		88	0.923564
1319	88			11	0.923564
1320			88	11	0.923564

SSRs (tot: 1)

Start position	End position	Sequence	Length
970	983	AG AG AG AG AG AG AG	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain