SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene27688

Length: 888 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene27688 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	cytochrome P450 monooxygenase CYP86A24 [Glycine max]	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	48%
Blast2go	cytochrome p450	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Alkane 1-monooxygenase.	EC:1.14.15.3	-	0.0	84%

Source	KEGGs	Term	Identity
Blast2go	Fatty acid metabolism	00071	84%
Blast2go	Arachidonic acid metabolism	00590	84%
Blast2go	Retinol metabolism	00830	84%
Blast2go	Metabolic pathways	01100	84%

Source	GOs	Term	Type	Identity
Blast2go	fatty acid metabolic process	GO:0006631	Biological Process	84%
Blast2go	protein binding	GO:0005515	Molecular Function	84%
Blast2go	alkane 1-monooxygenase activity	GO:0018685	Molecular Function	84%

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, E-class, group IV	IPR002403	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLC1

Fln msg: Overlapping hits, possible frame ERROR between 417 and 416, your sequence is shorter than subject: 251 - 528

Fln protein: KSSQQQQPRDDLLSRFMKKKDGDGKAYSDSFLQHVALNFILAGRDTSSVAMSWFFWLLIQNPRVEDNIIGELSEVLTKSRGNDPSKWIEKPLEFEEVDELVYLKAALTETLRLYPSVPEDSKYVLKDDTLPDGTFVPGxxSSITYCIYSGGRMESLWGPDCLEFKPERWMKNGKFESPQNAYKFLAFNAGPRICLGKDLAYLQMKTIVAGILLRHRISLDPSTPVEQKMSLTLFMKYGLRVFIEPRNLCA*

Protein Length: 252

Fln nts: AAAAGTTCACAACAACAACAGCCACGTGATGATTTGTTGTCCAGGTTTATGAAGAAGAAGGATGGAGATGGCAAGGCCTACTCGGATTCGTTTCTGCAACATGTCGCCCTGAATTTCATACTTGCTGGCAGGGATACTTCTTCTGTGGCCATGAGCTGGTTCTTCTGGTTGTTAATCCAGAATCCCCGGGTTGAGGACAATATTATTGGAGAACTTTCTGAGGTTTTAACCAAAAGTAGGGGCAATGATCCTTCAAAGTGGATTGAGAAGCCCCTGGAGTTTGAAGAGGTTGATGAATTGGTTTACCTAAAGGCTGCACTTACTGAGACTCTGAGGCTCTACCCTTCTGTTCCAGAGGACTCCAAATATGTTCTCAAGGATGACACCCTACCAGATGGCACATTTGTTCCAGGGxxxxxxAGTTCTATAACTTACTGTATCTATTCAGGGGGCAGGATGGAATCCCTATGGGGGCCTGATTGCTTAGAGTTCAAGCCTGAAAGATGGATGAAAAATGGCAAGTTCGAATCTCCTCAGAACGCTTATAAGTTCCTTGCGTTCAATGCAGGGCCTCGGATCTGCTTGGGCAAGGACTTGGCCTATTTGCAGATGAAAACTATCGTTGCTGGGATTCTACTGCGCCATCGAATTTCATTGGATCCCAGTACTCCTGTTGAGCAAAAAATGTCACTCACGCTATTTATGAAGTATGGCCTCCGAGTGTTCATTGAACCAAGGAATCTTTGTGCTTGATAGAGGATATGTTTGAATTATGGACTGCACAGTTGCAATACCATAGCTTCAAATATTTATACTTGTTACTATCGTGAACGGTTACGGTGGCTGCCTAGCTTAGCTAGATGGTTGAACTGTGCAAAGTAATTGCAGTA

Fln Alignment:

Contig27688___DDLLSRFMKKKDGDGKAYSDSFLQHVALNFILAGRDTSSVAMSWFFWLLIQNPRVEDNIIGELSEVL-----TKSRGNDPSKWIEKPLEFEEVDELVYLKAALTETLRLYPSVPEDSKYVLKDDTLPDGTFVPGxSSITYCIYSGGRMESLWGPDCLEFKPERWMKNGKFESPQNAYKFLAFNAGPRICLGKDLAYLQMKTIVAGILLRHRI-SLDPSTPVEQKMSLTLFMKYGLRVFIEPR
B8LLC1_______________EDLLSVFMKSRDEHGFLYSETLLRDVCVNFILAGRDTTSVALSWFFWLLLQHPSVEDKIMEEIYSILEARPNQKQEGNDPVCFSK-----DELKQMHYLHACLSEAIRLYPPLPLDRKQVSENVVLPDGTPIKKxTVIFYIIYAMGRMESIWGNDCMEFKPERWLNKGVFLS-HPAPKFAVFNGGPRLCLGKDFAYLQMKYLAASVLYCFKVRAADSIESVESKLGVTLYMKGGFRVTLHAR

SSRs (tot: 1)

Start position	End position	Sequence	Length
869	880	TGT TGT TGT TGT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain