SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene27671

Length: 2039 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene27671
CATTCGCGTGAATACTTTTTTAGATCACAGAACAAATCTTACAATTTTTGTCGATCAATTTCCTTAGAGGGCCATGGATGAGGAATACGATGTGATAGTGCTGGGCACTGGTCTGAAAGAATGCATCCTCAGCGGTCTCCTTTCTGTGGATCGGCTCAAGGTCCTCCACATGGACAGAAATGATTACTATGGAGGAGAATCTACTTCTCTTAATCTCATCCAGCTTTGGAAGAAGTTCCGAGGTAACGATAAGCCTCCTGCTCATCTCGGATCCAGTAGAGACTACAATGTTGATATGATCCCTAAGTTTATGATGGCAAATGGTAGTTTGGTGCGAGTCCTCATTCACACAGATGTTACAAAATACTTGTATTTTAAGGCTGTGGACGGTAGTTATGTATACAATAAAGGAAAGATATACAAAGTCCCAGCGACTGATGTGGAAGCTCTAAAATCTCCTCTTATGGGAATATTTGAAAAGCGTCGTGCTAGAAAGTTCTTTATTTATGTTCAAAATTATGACGAGAATGATCCAACAACACATGATGGCATGGACTTGACAAGAGTAACAGCAAGAGAACTTATTGCAAAATATGGATTAGATGATAATACTGTAGATTTCATTGGCCATGCATTGGCACTTCATCGGGATGACCGTTATCTATATGAGCCTGCATTAGAGACTGTAAACAAAATAAAGCTATATGAAGAATCTCTCGCACGTTTTCAAGGAGGGTCGCCATACATATACCCATTGTATGGGTTGGGTGAACTACCTCAGGGATTTGCACGTCTTAGTGCTGTCTATGGAGGAACATACATGCTGAACAAACCGGAGTGCAAGGTTGAGTTTGATGAAGAAGGTAAGGTGTGTGGTGAAGGGGAGACAGCCAGATGCAAAAAAGTAGTTTGTGATCCATCATATTTACCTAACAAGGTCAAGAAAATTGGAAAGGTTGCTCGTGCCATTTGTGTAATGAGCCACCCCATCCCAAACACAAATGACTCCCAATCAGTACAGATAATTCTGCCTCAGAAGCAACTTGGACGCAAGTCTGACATGTATGTATTTTGTTGTTCTTATTCACATAATGTTGCTCCCAAAGGGAAGTACATTGCTTTTGTTTCGGCTGAGGCAGAAACAGATCAACCAGAGGTAGAATTGCAACCAGGAATAGCTCTTCTTGGACCTGTTGATGAGATGTTCTTTGATACATATGATAGATTTGCTCCTGTTAATGAGCCTTCTCTTGACAATTGCTTCATATCCACTAGCTATGATGCGACAACACATTTCGAGACAACTGTGCAGGATGTTCTTGCCATGTACACCAACATAACTGGAAAGGTTTTGGACCTAAGTGTTGACCTAAGTGCTGCAAGTGCGGCTGAAGAATAATGGGCTGTAGCATATCAACCTTTAGTTGGGTTACACATTCCTCTAAGGCTGTACTTGTTTTGATATGATCTACAGTGTGTTGAAGTTTTAGTGTTTGTATGTATTTGGGAATCACGCCTTTACCTGGTGTTTTAATATCTGGAATGTTCAGGTCCAGACATAGAACACTGTTTTTTCAGCTGTTCATTCAAATCACTGGCTTTTATATCATTGATATGTATGAATTTGTCTGCAATAATTGTTCAGTGTTCAGTTTGATAGGAAGACAAGACGTAGAGGTTCTGACTGTGGGTGGTGGTAATCATGTAATATTTTCATCCATGCTTGAAACTCTATGTCTTGTTTTCCTATCAAACTGAACACGGAAAAATTATTGCAGACAAATTCATACATATCAATGATATAAAAGCCAGTGATTTGAATGAACAGCTGAAAAAACAGTGTTCTATGTCTGGACCTGAACATTCCAGATATTAAAACACCAGGTAAAGGCGTGATTCCCAAATACATACAAACACTAAAACTTCAACACACTGTAGATCATATCAAAAACAAGTACAGCCTTAGAGGAATGTGTAACCCAACTAAAGGTTGATATGCTACAGCCCATTATTCTTGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene sp_v2.0_unigene27671

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GDP dissociation inhibitor [Nicotiana tabacum]	-	-	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	gdp dissociation inhibitor	-	-	93%

Source	InterPros	Term	Type	Identity
Sma3	GDP dissociation inhibitor	IPR018203	-	-
Sma3		IPR002005	-	-
Sma3	Rab GDI protein	IPR000806	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWR2

Fln msg:

Fln protein: MDEEYDVIVLGTGLKECILSGLLSVDRLKVLHMDRNDYYGGESTSLNLIQLWKKFRGNDKPPAHLGSSRDYNVDMIPKFMMANGSLVRVLIHTDVTKYLYFKAVDGSYVYNKGKIYKVPATDVEALKSPLMGIFEKRRARKFFIYVQNYDENDPTTHDGMDLTRVTARELIAKYGLDDNTVDFIGHALALHRDDRYLYEPALETVNKIKLYEESLARFQGGSPYIYPLYGLGELPQGFARLSAVYGGTYMLNKPECKVEFDEEGKVCGEGETARCKKVVCDPSYLPNKVKKIGKVARAICVMSHPIPNTNDSQSVQIILPQKQLGRKSDMYVFCCSYSHNVAPKGKYIAFVSAEAETDQPEVELQPGIALLGPVDEMFFDTYDRFAPVNEPSLDNCFISTSYDATTHFETTVQDVLAMYTNITGKVLDLSVDLSAASAAEE*

Protein Length: 443

Fln nts: CATTCGCGTGAATACTTTTTTAGATCACAGAACAAATCTTACAATTTTTGTCGATCAATTTCCTTAGAGGGCC_-_ATGGATGAGGAATACGATGTGATAGTGCTGGGCACTGGTCTGAAAGAATGCATCCTCAGCGGTCTCCTTTCTGTGGATCGGCTCAAGGTCCTCCACATGGACAGAAATGATTACTATGGAGGAGAATCTACTTCTCTTAATCTCATCCAGCTTTGGAAGAAGTTCCGAGGTAACGATAAGCCTCCTGCTCATCTCGGATCCAGTAGAGACTACAATGTTGATATGATCCCTAAGTTTATGATGGCAAATGGTAGTTTGGTGCGAGTCCTCATTCACACAGATGTTACAAAATACTTGTATTTTAAGGCTGTGGACGGTAGTTATGTATACAATAAAGGAAAGATATACAAAGTCCCAGCGACTGATGTGGAAGCTCTAAAATCTCCTCTTATGGGAATATTTGAAAAGCGTCGTGCTAGAAAGTTCTTTATTTATGTTCAAAATTATGACGAGAATGATCCAACAACACATGATGGCATGGACTTGACAAGAGTAACAGCAAGAGAACTTATTGCAAAATATGGATTAGATGATAATACTGTAGATTTCATTGGCCATGCATTGGCACTTCATCGGGATGACCGTTATCTATATGAGCCTGCATTAGAGACTGTAAACAAAATAAAGCTATATGAAGAATCTCTCGCACGTTTTCAAGGAGGGTCGCCATACATATACCCATTGTATGGGTTGGGTGAACTACCTCAGGGATTTGCACGTCTTAGTGCTGTCTATGGAGGAACATACATGCTGAACAAACCGGAGTGCAAGGTTGAGTTTGATGAAGAAGGTAAGGTGTGTGGTGAAGGGGAGACAGCCAGATGCAAAAAAGTAGTTTGTGATCCATCATATTTACCTAACAAGGTCAAGAAAATTGGAAAGGTTGCTCGTGCCATTTGTGTAATGAGCCACCCCATCCCAAACACAAATGACTCCCAATCAGTACAGATAATTCTGCCTCAGAAGCAACTTGGACGCAAGTCTGACATGTATGTATTTTGTTGTTCTTATTCACATAATGTTGCTCCCAAAGGGAAGTACATTGCTTTTGTTTCGGCTGAGGCAGAAACAGATCAACCAGAGGTAGAATTGCAACCAGGAATAGCTCTTCTTGGACCTGTTGATGAGATGTTCTTTGATACATATGATAGATTTGCTCCTGTTAATGAGCCTTCTCTTGACAATTGCTTCATATCCACTAGCTATGATGCGACAACACATTTCGAGACAACTGTGCAGGATGTTCTTGCCATGTACACCAACATAACTGGAAAGGTTTTGGACCTAAGTGTTGACCTAAGTGCTGCAAGTGCGGCTGAAGAATAA___TGGGCTGTAGCATATCAACCTTTAGTTGGGTTACACATTCCTCTAAGGCTGTACTTGTTTTGATATGATCTACAGTGTGTTGAAGTTTTAGTGTTTGTATGTATTTGGGAATCACGCCTTTACCTGGTGTTTTAATATCTGGAATGTTCAGGTCCAGACATAGAACACTGTTTTTTCAGCTGTTCATTCAAATCACTGGCTTTTATATCATTGATATGTATGAATTTGTCTGCAATAATTGTTCAGTGTTCAGTTTGATAGGAAGACAAGACGTAGAGGTTCTGACTGTGGGTGGTGGTAATCATGTAATATTTTCATCCATGCTTGAAACTCTATGTCTTGTTTTCCTATCAAACTGAACACGGAAAAATTATTGCAGACAAATTCATACATATCAATGATATAAAAGCCAGTGATTTGAATGAACAGCTGAAAAAACAGTGTTCTATGTCTGGACCTGAACATTCCAGATATTAAAACACCAGGTAAAGGCGTGATTCCCAAATACATACAAACACTAAAACTTCAACACACTGTAGATCATATCAAAAACAAGTACAGCCTTAGAGGAATGTGTAACCCAACTAAAGGTTGATATGCTACAGCCCATTATTCTTGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

Contig27671___MDEEYDVIVLGTGLKECILSGLLSVDRLKVLHMDRNDYYGGESTSLNLIQLWKKFRGNDKPPAHLGSSRDYNVDMIPKFMMANGSLVRVLIHTDVTKYLYFKAVDGSYVYNKGKIYKVPATDVEALKSPLMGIFEKRRARKFFIYVQNYDENDPTTHDGMDLTRVTARELIAKYGLDDNTVDFIGHALALHRDDRYLYEPALETVNKIKLYEESLARFQGGSPYIYPLYGLGELPQGFARLSAVYGGTYMLNKPECKVEFDEEGKVCG---EGETARCKKVVCDPSYLPNKVKKIGKVARAICVMSHPIPNTNDSQSVQIILPQKQLGRKSDMYVFCCSYSHNVAPKGKYIAFVSAEAETDQPEVELQPGIALLGPVDEMFFDTYDRFAPVNEPSLDNCFISTSYDATTHFETTVQDVLAMYTNITGK
A9NWR2_______________MDEEYDVIVLGTGLKECILSGLLSVDRLKVLHMDRNDYYGGESTSLNLTQLWKKFRGNDKPPAHLGPSRDYNVDMIPKFMMANGSLVRVLIHTDVTKYLYFKAVDGSYVYNKGKIYKVPATDVEALKSPLMGIFEKRRARKFFIYVQNYDQNDPKTHDGMDLTRVTTRELIAKYGLDDNTVDFIGHALALHRDDRYLFEPALETVKKIKLYEESLARFQGGSPYIYPLYGLGELPQGFARLSAVYGGTYMLNKPECKVEFDEEGKVCGVTSEGETARCKKVVCDPSYLTNKVRKVGKVARAICIMSHPIPNTNDSQSVQIILPQKQLGRKSDMYVFCCSYSHNVAPKGKYIAFVSAEADTDQPEVELQPGIALLGPVDEMFFDTYDRFVPVNEPSLDNCFISTSYDATTHFETTVQDVLAMYTHITGK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain