SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene27621

Length: 1097 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene27621 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ROP-interactive CRIB motif-containing protein 4 [Arabidopsis thaliana] dbj\|BAB09617.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAQ65146.1\| At5g16490 [Arabidopsis thaliana] dbj\|BAD44641.1\| putative protein [Arabidopsis thaliana] gb\|AED92300.1\| RO	-	-	1.0e-15	35%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	38%
Blast2go	protein	-	-	2.64343e-23	53%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of cellular component size	GO:0032535	Biological Process	2.64343e-23	53%
Blast2go	regulation of cellular process	GO:0050794	Biological Process	2.64343e-23	53%
Blast2go	establishment of localization in cell	GO:0051649	Biological Process	2.64343e-23	53%
Blast2go	plasma membrane	GO:0005886	Cellular Component	2.64343e-23	53%
Blast2go	cellular component assembly at cellular level	GO:0071844	Biological Process	2.64343e-23	53%

Source	InterPros	Term	Type	e value	Identity
Sma3	PAK-box/P21-Rho-binding	IPR000095	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
350		25		75	0.996473
377	66			33	1.0
472		15	84		0.999986
559	11		88		0.923564
576		14	85		0.993533
577		14	85		0.993533
578		14		85	0.993533
768	87			12	0.992554
916		50		50	1.0
946		28		71	1.0
947		28		71	1.0
948		28	71		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain