SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene27585

Length: 1147 nt

Origin of reads: Inia v1 Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene27585

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Thaumatin-like protein L1 n=1 Tax=Pinus monticola RepID=D3IZ05_PINMO	-	-	95%
FL-Next	tr=Thaumatin-like protein L1; Pinus monticola (Western white pine) (Strobus monticola).	-	-	95%
Blast2go	osmotin-like protein	-	-	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	0.0	71%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Blue (type 1) copper domain	IPR000923	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Thaumatin, pathogenesis-related	IPR001938	-	-
Sma3	GNS1/SUR4 membrane protein	IPR002076	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Thaumatin, conserved site	IPR017949	-	-
Sma3		IPR017973	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D3IZ05

Fln msg:

Fln protein: MGLILRSSALSLLLILFSGGAMMVICAKTSPLTITIMNSCPVTIWPGLQASEGHDVLEQGGFALESLKSRSFTVANPWNGVVWARTGCSFSGGNGSCLTGDCDGKLQCNGTGGRNPVTLAQLSLHHGGNDVSSYTLSLVNGFNLPLTITPHGGRGQCGIPRCRANMLESCPKELQVKNGNNVIACKTACQAFRTDAYCCTGQHYNGSRTCPPTTYSQMFKRACPNAFAYPDDNPALVHNCVTPNEIKLIFCH*

Protein Length: 254

Fln nts: AGTATCTGCCTCCGGGCTTCCCTTGCATTTCTTTCTTCTTCAATATCATTTAAGACTTAACAGTCTTAATCCTGATATCTGAGTAGTGATCAAT_-_ATGGGCTTAATCTTGAGGTCGAGCGCCCTTTCTCTATTACTGATTCTTTTCTCAGGTGGGGCAATGATGGTGATCTGCGCTAAAACCAGTCCTCTGACCATTACTATCATGAACAGTTGCCCTGTCACTATATGGCCTGGATTGCAGGCAAGTGAAGGGCACGATGTGCTGGAGCAAGGCGGGTTTGCTCTGGAAAGTCTTAAATCCAGGAGTTTTACCGTGGCAAACCCGTGGAACGGTGTTGTTTGGGCAAGAACTGGTTGCAGTTTCAGCGGAGGGAACGGATCATGCCTAACGGGAGACTGTGATGGTAAACTACAGTGCAATGGCACGGGAGGAAGAAACCCGGTGACTCTTGCGCAGCTGTCTTTGCATCATGGAGGCAATGATGTTTCTTCATATACTCTGAGTCTGGTAAACGGTTTCAACTTGCCCTTAACCATTACACCTCATGGAGGTCGCGGGCAATGCGGCATCCCTAGATGTAGGGCTAATATGCTTGAGAGCTGTCCTAAGGAGCTTCAAGTAAAGAATGGAAATAATGTAATAGCTTGCAAGACTGCATGCCAGGCTTTCAGAACAGATGCCTACTGCTGCACTGGCCAGCATTACAACGGCTCCCGTACATGCCCGCCTACAACATATTCCCAGATGTTTAAACGCGCATGCCCTAATGCTTTCGCGTATCCCGACGACAATCCTGCTCTCGTTCACAACTGCGTTACACCAAACGAGATCAAGCTCATCTTCTGTCACTAG___ATCATCACAGCAACACCACTGCTTCCAACGCTATGCCATCCATGCTGATCGGCTCTTAATTTAATACCTATAGTTGTTATAATATCGTCATGATACAGTGCATACTTCTATTTTCAGATTGGAACAAGTAAATAAAATGACTAGCCTGTCAGAGCTTTTATGCGTTTCTTATACTGTACAATTTGAAGTTGGAAAATAAATGTTTAACCTCGATCGAAGATATGTGATGCAATTCTCACTGGAAGAGTGGTGGATCTAAATGTTTGCCGAGATAGAAGGAGCTTTGAATTGATA

Fln Alignment:

Contig27585___GGAMMVICAKTSPLTITIMNSCPVTIWPGLQASEGHDVLEQGGFALESLKSRSFTVANPWNGVVWARTGCSFSGGNGSCLTGDCDGKLQCNGTGGRNPVTLAQLSLHHGGNDVSSYTLSLVNGFNLPLTITPHGGRGQCGIPRCRANMLESCPKELQVKNGNNVIACKTACQAFRTDAYCCTGQHYNGSRTCPPTTYSQMFKRACPNAFAYPDDNPALVHNCVTPNEIKLIFCH
D3IZ05_______________GGAIMVICAKTSPLTITIMNSCPTTIWPGLQASEGHDVLEQGGFALESLKSRSFSVANPWNGVVWARTGCSFSGEKGSCLTGDCDGKLQCNGTGGRNPVTLAQLSLHHGGNDVSSYTLSLVNGFNLPLTFTPHGGRGRCGIPRCMANMLESCPKELQVKNGDNVIACKTACQAFRTDAYCCTSQHYNGSRTCPPTTYSQIFKRACPNAFAYPDDNPALVHNCVTPNEIKLIFCH

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
722		1		98	0.995875
823	53			46	1.0
1019	7	15		76	1.0
1020	8	4		86	0.999539
1021	12	87			0.999964
1052	80		20		0.995493
1071	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain