SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene27570

Length: 1415 nt

Origin of reads: Inia v1 Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene27570 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	transmembrane protein G1P-related 1 [Arabidopsis thaliana] gb\|AAB18126.1\| G1p [Arabidopsis thaliana] gb\|AAC14406.1\| putative transmembrane protein G1p [Arabidopsis thaliana] gb\|AAO42853.1\| At3g51790 [Arabidopsis thaliana] dbj\|BAE99476.1\| Cytochrome C Matu	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).	-	-	66%
Blast2go	cytochrome c-type biogenesis protein	-	-	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	CcmE/CycJ protein	IPR004329	-	0.0	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7LTY4

Fln msg: your sequence is longer than subject: 302 - 257

Fln protein: MMRRIGYWLGREVSHVQKALTIHPNCHFQYRGGQICFSTSSPALPIRPQAWQARGWMLQQGVQARGWMQQGGQVWRNMATVRRMAPGGSVNARGIDIGARARRNQNRRLWTYALSFSCIAGFIIIVLSSFQDSLVFYVTPTDALNKFRSDPSKNKFRLGGLVLEGSVVQPASTTEMEFVVTDLVTDVLVRHKGPVPDLFREGHSVVVEGFLRPISTSSSSENSGTESFRPLSAGHVASEKARSNNCYFSAIDVLAKHDEKYMPKEVAAAIEKNRAAIEAAHAKPQPQLQNSQLQESEQVHS*

Protein Length: 303

Fln nts: GGAAGCAAAAAATTAGTCTTGACTAAGAAAGTTCTAGGAAAAGTATAAATGACATTGCTCAATCACAAATAATTGTCGGGGGTGATGCTGCATGCATTTATTGACTGAACGAATGAATCGCTCACACTCTCAGAGAAGAGAAAG_-_ATGATGCGAAGAATTGGGTATTGGCTGGGACGAGAAGTCTCCCATGTCCAGAAAGCGCTGACAATCCATCCCAATTGCCATTTCCAATACCGGGGAGGGCAAATTTGTTTTTCGACATCATCGCCAGCTCTGCCAATCAGGCCTCAAGCATGGCAGGCGAGGGGCTGGATGCTGCAGCAGGGTGTACAGGCGAGGGGCTGGATGCAGCAGGGTGGACAGGTATGGAGAAACATGGCCACGGTCCGTCGGATGGCCCCTGGGGGGAGCGTGAACGCCCGAGGAATCGACATCGGAGCGCGGGCGAGGCGTAACCAGAATCGGAGACTCTGGACGTATGCCCTCTCGTTCAGCTGCATAGCGGGGTTTATTATCATAGTTCTCAGCAGCTTCCAGGATTCCTTGGTCTTCTATGTCACCCCCACCGACGCCCTCAACAAATTCAGGAGCGATCCGTCCAAGAACAAATTCCGCCTCGGTGGCCTCGTTCTAGAAGGGAGCGTGGTGCAGCCAGCCTCGACTACGGAGATGGAGTTCGTTGTCACGGATCTGGTTACCGACGTTCTGGTACGCCACAAGGGGCCGGTGCCCGATCTCTTCAGGGAAGGCCACTCCGTTGTCGTCGAGGGCTTTCTCCGCCCCATTTCTACTTCTTCGTCGTCGGAAAACAGCGGCACTGAATCCTTCCGTCCCCTGTCGGCCGGTCATGTTGCGTCGGAAAAGGCGAGAAGCAACAACTGCTATTTTTCTGCCATCGATGTCCTTGCAAAGCACGACGAGAAATACATGCCCAAAGAAGTTGCTGCTGCCATTGAGAAAAACCGGGCTGCAATTGAAGCCGCTCATGCCAAGCCTCAGCCTCAGCTTCAGAATTCACAGCTCCAAGAGTCCGAGCAAGTTCATTCTTGA___CCTATTTTTTATATAATAAATCGCCTCCTTTTAGTGCACGGGATAATTCAAATGAGCTTCCCTTTGATGAATAGATGCGGTGTATCGCTCTAGTTTCTATCATATCTCTTTTTGACATTTTCTGCTGCTGCAGATGAGGGGAAATTTCTGTGGTTTTTAGTTACTGATTAAATATTCAATAAGAATTTTTTTTTGGGTACGGATTTAGCCAAGTTTGTTTACATGTAGACCCATTTTTAACAATACTCGCGGAAAATCTTGGCAAATACCCTAGCAACAAGTGTATGAGCCTTTTTTTCTGCAGGAATTTCATTTATGAATGCCATGACATAATGTTTGTTTTCAAATCATCAATTACAAAAGCC

Fln Alignment:

Contig27570___QNRRLWTYALSFSCIAGFIIIVLSSFQDSLVFYVTPTDALNKFRSDPSKNKFRLGGLVLEGSVVQPASTTEMEFXXXXXXXXXXVRHKGPVPDLFREGHSVVVEGFLRPIXXXXXXXXXXXXSFRPLSAGHVASEKARSNNCYFSAIDVLAKHDEKYMPKEVAAAIEKNRAAIEAA
D7LTY4_______________QNRRLWTYALTFSCIAGFVVIVLNQFQDQLVFYLTPSDAMEKFAENPTKNKFRLGGLVLEGSVAQPAASQEMEFVITDLITDILVRYKGSLPDLFREGHSVVVEGFIKP----------YTDEVRKEVSTKPVSQKARNLDCFFSATEVLAKHDEKYMPQEVAAAIEKNKKIIEAA

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1383	88		11		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain