SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene27504

Length: 1019 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene27504 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative serine peptidase [Oryza sativa Japonica Group]	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	thymus-specific serine protease	-	-	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S28	IPR008758	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWA5

Fln msg: Overlapping hits, possible frame ERROR between 276 and 275, your sequence is shorter than subject: 266 - 489

Fln protein: LQEVTRLAEEGLSTSANAVKSLFGAEKLNNDGDFLYLLADAAVMAFQYGNPDVLCSPLVKANSSGQDLMVAYADYVKNYISDESVESYGQQxxLKKTTIEADSNDVTSSRLWWYQVCTEFAYFQVSPSNDSIRSSKVDTMYHLDLCENVFGKDIYPEVDITNVYYGGTSIAGSKIIFMNGSQDPWRHASKQKSSDNMPSVLITCHNCGHGVDLRGCPQSPSRIEGDASDCASPDVVHKARQQMVEHIDLWLSQCQDQDHGGIFLV*

Protein Length: 267

Fln nts: CTGCAAGAAGTCACAAGGCTTGCTGAGGAGGGTTTATCTACTAGTGCAAATGCTGTAAAGTCTTTGTTTGGTGCAGAAAAGTTGAATAACGATGGCGACTTTCTTTACCTATTGGCAGATGCTGCAGTGATGGCGTTTCAATATGGGAATCCCGATGTACTTTGCTCTCCTCTTGTTAAAGCAAATTCATCAGGACAAGATTTGATGGTTGCTTATGCAGATTATGTAAAAAATTATATATCTGATGAAAGTGTTGAAAGTTACGGCCAACAGxxxxxxCTGAAAAAAACAACTATTGAAGCTGATAGCAACGATGTAACTAGCTCTCGGTTATGGTGGTATCAGGTTTGCACAGAATTTGCCTACTTTCAAGTTTCCCCATCCAATGACAGTATACGATCGTCGAAGGTGGATACAATGTACCATCTGGATCTCTGTGAAAATGTTTTTGGCAAAGACATATATCCTGAAGTGGATATAACCAATGTGTACTATGGAGGCACTAGCATTGCAGGTTCAAAGATAATTTTTATGAATGGTTCACAAGATCCATGGAGACATGCATCCAAGCAAAAGTCATCTGATAATATGCCGTCGGTTCTGATCACATGTCATAATTGTGGTCATGGTGTTGACCTTCGAGGATGTCCTCAGTCACCTTCCAGAATCGAGGGGGACGCTTCTGATTGTGCTTCCCCAGACGTAGTGCACAAGGCAAGGCAACAAATGGTTGAGCATATTGACCTATGGCTTTCACAATGCCAAGATCAAGATCACGGTGGGATCTTTTTAGTGTAGAAAGTTGATTTTGATTGAATAATTTGTCTGAATGTGTAAATGAAGAATAATTATATACATTAGTTTTTAGTAGAAATAAAATGCATTCATGCTTACAGTACAAAATATTGACGTTTAATTAATGGTGTTGATGTATTTTGATTGAATAATTTGTTTGAATTTGTAAATAAAAAAATAATTATGTGCATTACCTTTTGGTAGAAATAAAATGCATCATGCTTAG

Fln Alignment:

Contig27504___LQEVTRLAEEGLSTSANAVKSLFGAEKLNNDGDFLYLLADAAVMAFQYGNPDVLCSPLVKANSSGQDLMVAYADYVKNYISDESVESYGQQxLKKTTIEADSNDVTSSRLWWYQVCTEFAYFQVSPSNDSIRSSKVDTMYHLDLCENVFGKDIYPEVDITNVYYGGTSIAGSKIIFMNGSQDPWRHASKQKSSDNMPSVLITCHNCGHGVDLRGCPQSPSRIEGDASDCASPDVVHKARQQMVEHIDLWLSQCQDQDHGGIFLV
A9NWA5_______________LQEVTRLAEQGLSTNANAVKSLFGAEKLKNDGDFLYLLADAAVTAFQYGYPDVLCSPLVEASSSGKDLMVAYADYVKNYSSDGGVESYGQQxLKNTTVDADSNGVSNSRSWWYQVCTEFAYFQVAPSNDSVRSSKVDTKYHLDLCENVFGKGIYPEVDITNLYYGGTSIAGSKIIFMNGSQDPWRHASKQKSSDNMPSYIITCHNCGHGTDLRGCPQSPSRIEGDASDCASPDVVHKARQQMVEHIDLWLSQCQDEDHGGIFVV

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
740		63		36	1.0
741	63	36			1.0
742	36		63		1.0
744	18		36	9	1.0
750	10			90	0.90298
751		10		90	0.90298
776		88	11		0.923564
779	88			11	0.923564
780			11	88	0.923564
782		11		88	0.923564
785	12	25		62	1.0
786	87	12			0.992554
788	12			87	0.992554
789	12			87	0.992554
790			14	85	0.993533
791			14	85	0.993533
793		14		85	0.993533
797		14		85	0.993533
798	85		14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain