SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene27351

Length: 1254 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene27351 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Tubulin-specific chaperone B, putative n=1 Tax=Ricinus communis RepID=B9ST41_RICCO	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	tubulin folding cofactor b	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	embryo development	GO:0009790	Biological Process	80%
Blast2go	cell division	GO:0051301	Biological Process	80%
Blast2go	phragmoplast	GO:0009524	Cellular Component	80%
Blast2go	nucleus	GO:0005634	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin	IPR000626	-	-
Sma3	CAP Gly-rich domain	IPR000938	-	-
Sma3	Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p	IPR001678	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AEA6

Fln msg:

Fln protein: MASVLQNVPDDTVLLHVTHSNLKHHFSELRFSLHSTVGATKERLWKNCGTAVDSMALQLFDDTDKKVCDMNEDSQPLGFYSPLDGYRIHIVDMDPSSMTAGGWLEDTSLVEKYHISEESYGKLDGTFRKFKERLISQDPSIAQPKISEDYMQDLAANIKVGDRCEVDPGGRRGVVMFVGRAETLPPGFWVGVQYDEPVGKNDGMVKGKRYFSCPPLQGAMLRPDKVKVGDYPERDPFEEEEI*

Protein Length: 244

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGCCAATCTAACGAAGTAGAGTCCCCACTTTTTTCAGGAATTTGAATCAGGTGGACCCTAAACCAATTAGTCGATGCATAAAATGATTTGAATGTTTTGCATTTAGAATTGGACCCTCAACAAACCAGCTAAAATTACGAAGTGTGACTCGATCGGGTTACCTTTCAACTTTAATTTGTTGTTCTCTGCTTCCTTTCTGTTCAGAAAGGTTTTCATTCGCCAAACGACGCCTCGAAGTTCTGGCACCTTCAGATCGATATTGATTTCTGGTGATTTTATAGTGACACATCGCAGAGCAACGG_-_ATGGCCTCTGTCCTGCAGAATGTGCCCGATGACACAGTCCTTCTTCATGTCACTCATTCTAATCTCAAGCATCATTTTAGCGAGCTAAGGTTTTCTCTTCATTCTACAGTTGGGGCTACAAAAGAGAGGCTTTGGAAGAATTGTGGGACAGCAGTTGACTCCATGGCTCTTCAACTCTTTGATGACACTGACAAGAAGGTCTGTGACATGAATGAGGACTCACAGCCTCTTGGGTTTTATTCTCCACTTGATGGGTATCGCATACATATTGTAGATATGGACCCATCATCAATGACTGCTGGAGGCTGGTTAGAAGACACTTCATTGGTGGAAAAGTATCACATTTCAGAAGAGTCTTATGGTAAACTTGATGGGACGTTTAGAAAATTCAAGGAAAGACTGATTTCTCAAGACCCTTCTATTGCTCAACCAAAGATTTCAGAAGACTACATGCAAGATCTAGCTGCAAATATAAAAGTAGGTGATAGATGTGAAGTTGATCCTGGAGGCAGGAGGGGTGTGGTTATGTTTGTGGGCAGGGCAGAAACTCTTCCTCCTGGATTTTGGGTTGGAGTGCAATATGATGAACCTGTTGGCAAGAATGATGGAATGGTGAAAGGAAAACGCTATTTCAGTTGTCCACCGTTGCAAGGCGCTATGCTTCGACCAGATAAAGTGAAGGTGGGAGATTATCCTGAGCGGGACCCATTTGAAGAAGAGGAAATATAA___GTACTTCAATGCTTTTAAACTGTCTTGGGAGTTCATGTATACGTCCTTGTTAGTAAGGATTCATTATTCATGAAAAATATTGGATGCATGAGATATTTATAGGATGTATATGTTTTACCATCCTTTCTACTTATATTTTTCATGTAAATCTACCATCACGTCGTATGTACATCTTGGGTGGTTCGATAAAGAGGAGGTT

Fln Alignment:

Contig27351___MASVLQNVPDDTVLLHVTHSNLKHHFSELRFSLHSTVGATKERLWKNCGTAVDSMALQLFDDTDKKVCDMNEDSQPLGFYSPLDGYRIHIVDMDPSSMTAGGWLEDTSLVEKYHISEESYGKLDGTFRKFKERLISQDPSIAQPKISEDYMQDLAANIKVGDRCEVDPXXXXXXXXXXXRAETLPPGFWVGVQYDEPVGKNDGMVKGKRYFSCPPLQGAMLRPDKVKVGDYPERDPFEEEEI
D5AEA6_______________MASVLQNVCDDTVLLHVTHSNLKQHFSEIRFSLHSTVGATKERLWKNCGTSVDSMVLQLFDDNDKKVCDMNEDSQPLGLYSPRDGYRIHIVDMDPSSMTAGGWLEDTSLVEKYRISEESYGKLDGTFRKFKERLVSPDPSISQPKISEDYMQDLAANIKVGDRCEVDPGGKRGAVMFVGRAETLPPGFWVGVQYDEPVGKHDGMVKGKRYFSCPPLQGVMLRPDKVKVGDYPERDPFEEEEI

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
1025			23	76	1.0
1026	23			76	1.0
1027		76	23		1.0
1035	76	23			1.0
1041	78	7		14	0.999974
1044		14	71	14	0.999974
1045		76	15	7	0.999983
1123	71	28			1.0
1124	71	28			1.0
1125		28		71	1.0
1126	14	14		71	0.984337
1127	14	71		14	0.984337

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain