SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene27343

Length: 1524 nt

Origin of reads: Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene27343

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative serine carboxypeptidase [Medicago truncatula]	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	79%
Blast2go	serine carboxypeptidase ii-3	-	-	70%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S10, serine carboxypeptidase	IPR001563	-	0.0	-
Sma3	Peptidase S10, serine carboxypeptidase, active site	IPR018202	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLR6

Fln msg: your sequence is shorter than subject: 456 - 535

Fln protein: SHSLQTAEWEFDSPLSSFKNDSDYLTESEDGHLREADYLPHGLPGQPEGIKFKQYSGYVTVNAHAGRALFYYFAEAVRDPSKQPLVLWLNGGPGCSSLGIGALEELGPFRVNPDGKTLYFNPDGWNQVANLLFLESPAGVGFSYSNTSADYSEYSGDRRTATDAYAFLVKWFNRFPQYKFRDFYIAGESYAGNYIPELAATILHHQRLSQASFINFKGIMVGNGIMNSDTDGIGEYTYPWTHALMSDETYEALINNCTQSDADEKFCSDLEDTMDREMGNINPYNIYAPLCPTDSSQSSKLAQEKVAEIPAYDPCMDDYVDAYLNSPEVQKAIHASVTNWSQCSSDLNWNDSAFTMLPTYRRLIAAGLRILLYSGDTDTVVPVTSTRLSINELKLPIETPWYPWLNGDEVGGYTVIYKGLTFATVRGSGHEVPEYQPSRALTLFKSFLAGKPLPS*

Protein Length: 457

Fln nts: AGCCATAGCCTACAAACTGCAGAGTGGGAGTTTGATAGCCCCCTGTCAAGCTTTAAGAATGATTCCGATTATTTGACAGAGTCAGAAGATGGTCACCTGCGCGAAGCTGATTATCTCCCCCATGGCCTCCCCGGACAGCCGGAGGGCATCAAATTTAAACAGTACTCAGGGTATGTAACAGTGAACGCCCATGCAGGCAGAGCGCTTTTCTATTATTTTGCGGAGGCCGTTCGAGACCCTTCAAAGCAGCCGCTGGTTCTCTGGCTTAATGGAGGGCCTGGATGTTCGTCACTCGGAATTGGAGCACTTGAGGAACTCGGACCTTTCCGCGTAAATCCAGACGGGAAAACGCTCTACTTCAATCCCGACGGATGGAACCAAGTGGCCAATCTATTGTTTCTGGAGTCCCCAGCAGGCGTTGGATTCTCTTACTCGAACACGAGCGCTGATTATTCAGAATATAGTGGTGATAGACGAACAGCTACAGACGCGTATGCATTTTTGGTAAAATGGTTTAACAGATTTCCACAATACAAATTCCGAGATTTCTACATAGCTGGGGAAAGTTATGCAGGAAATTACATTCCAGAGTTGGCTGCAACAATTTTACATCACCAAAGGTTATCACAGGCTTCTTTCATTAATTTCAAAGGAATAATGGTGGGGAATGGCATAATGAATAGTGATACGGATGGTATTGGAGAATACACGTACCCGTGGACACATGCATTGATGTCGGATGAAACTTATGAGGCTTTGATCAACAACTGTACGCAATCAGATGCAGATGAAAAGTTTTGCAGTGATTTGGAAGATACGATGGACAGAGAGATGGGAAATATCAATCCCTACAACATCTATGCTCCGCTATGCCCAACTGACTCATCCCAATCATCCAAATTAGCCCAGGAGAAAGTAGCAGAGATTCCCGCATACGATCCTTGCATGGATGACTACGTAGACGCGTATCTGAACAGCCCGGAAGTTCAGAAGGCCATACATGCAAGCGTCACAAACTGGAGCCAATGCAGTAGTGATCTTAACTGGAACGATTCTGCCTTTACTATGTTACCGACCTATCGTCGACTAATCGCAGCAGGGTTGCGAATACTTCTCTATAGCGGAGACACAGATACAGTAGTGCCCGTGACCTCCACGAGACTTTCCATCAATGAGCTTAAGCTTCCAATTGAGACTCCATGGTACCCCTGGCTTAACGGTGACGAGGTGGGAGGATATACTGTAATTTACAAGGGCCTAACATTTGCCACCGTTAGGGGGTCGGGGCATGAAGTTCCGGAATATCAACCGTCCAGGGCTTTAACGTTGTTCAAAAGTTTTTTGGCAGGGAAGCCCTTGCCAAGTTAA___TTTCATCGTGTGGAAATTACCGAGGCTGCCTGTATAACCGTCCGTCACTAGTACAATATCTCGATCCGCAGTGATCATAGGCCATTTAGACATTATTGATAGACCATCTATTTTTCATTGATTTCTTAAAAATTTACTACTCTAGGGTTACATTTA

Fln Alignment:

Contig27343___SHSLQTAEWEFDSPLSSFKNDSDYLTESE-DGHLREADYLPHGLPGQPEGIKFKQYSGYVTVNAHAGRALFYYFAEAVRDPSKQPLVLWLNGGPGCSSLGIGALEELGPFRVNPDGKTLYFNPDGWNQVANLLFLESPAGVGFSYSNTSADYSEYSGDRRTATDAYAFLVKWFNRFPQYKFRDFYIAGESYAGNYIPELAATILHHQRLSQASFINFKGIMVGNGIMNSDTDGIGEYTYPWTHALMSDETYEALINNCTQSDADEKFCSDLEDTMDREMGNINPYNIYAPLCPTDSSQSSKLAQEKVAEIPAYDPCMDDYVDAYLNSPEVQKAIHASVTN----WSQCSSDLNWNDSAFTMLPTYXXXXXXXXXXXXYSGDTDTVVPVTSTRLSINELKLPIETPWYPWLNGDEVGGYTVIYKGLTFATVRGSGHEVPEYQPSRALTLFKSFLAGKPLP
B8LLR6_______________SHGLQTTNWGLDNALISFRNESEYLTESKAEGHTQEADYLPHGLPGQPMGIKFRQYSGYVTVDAKAGRALFYYFTEAVRDPSKQPLVLWLNGGPGCSSLGFGAMAEVGPFRVNPDGKTVHFNRYTWNQVANILFLESPAGVGFSYSNTSSDYSKHSGDRRTAKDAYTFLMKWFIRFPQYKFRDFYIAGESYAGNYIPELAATILHHQRLSQASFINFKGIMVGNGIMNSDTDNIGQITYPWTHALISDETYEGLINNCIKSNVDEILCEVLELKMSLEMGNIDPYSIYAPLCLTNSSE---LAKQEEAAIPGYDPCIDDYVSKYFNRPDVQKAIHANVTNLNHRWIHCSDLLRWNDSASTVLPIYRHLIARGLRILLFSGDTDTVVPVTSTRLSINELKLPIATPWYPWLNGDEVGGYTVIYKGLTFATVRGAGHEVPAFQPSRALTLFKSFLAGKPLP

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1326	12		87		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain