SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene27336

Length: 2276 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene27336
GTGTATTTGTTGAGAGAGAAGAGGTTTTTGCAGCCTGGGTATAACAAGGATCTGCTTCATCAAGATGAGAATGAGATAAGAAATGCTCCCCTGAGGCCTCACAAGGACTCGGTCCAACTAATGGAAAGTACTCTGCAGATGAACCAGACGAGGAATCTGACCCAGATTGAGAAGTCGGCAATGGAGGCATGGAGTCTGGGATTGAAGGCATGGAAGGATGTGGAAGCCTTTGCGGAGGACGGGGTTGGAACCGCAGACCGCTGGATTGAGTCATGCCCCCATTCGATCTCCCTGAGCGGTTCGGAATTGATGAAATCAGGAAAGATAATGCTTCTCCCCTGTGGAATGAGATTGGGTTCTTCCATAACATTGGTGGGAATGCCCAGACATGCCCACATGGAAAATGATCCCAAGATATCTAGTTTGAAGGAGGGGGATTCCTCATTGTTGGTTTCTCAGTTCATGATTGAATTGCAGGGGTTAAAAGCCGTGGATGGGGAGGACCCACCTAGGATTTTGCACTTCAATCCGAGGTTGAAGGGAGATTGGAGTGGAAAGCCTGCTATAGAGCAGAATACATGTTACAGGATGCAGTGGGGATCTGCGCAGAGGTGCGAGGGCTCAGAATCAAGTGCCGAGGATGAAACAGTTGATGGACTTCCCAAATGTGAAAAGTGGCTTACTGATAATGATGATAGGAAAGAAGAAAAGGCTACATGGTGGCTGAATCGTTTGATGGGGCGTGCAAAGAAGTCGTCATCAATTGATTGGCCATATCCATTTGTGGAGGGAAAATTATTTGTTCTTACATTAAGTGCAGGTTTGGAAGGTTATCATGTGAATGTGGACGGGAGGCATGTGACCTCTTTTCCTTATCGAACAGGATTTGTGCTTGAAGATGCCACTGGCTTCTCTGTAAATGGTGACATTGATGTGCATACAGTTGTTGCTGCTTCCTTGCCTGTCTCACATCCAAGCTTTTCACCTCAAAGACTTCTAGACATGTCAGAAAAATGGAGAGCTCCACCTTTGCCTGAAGGCCCAGTGGATCTTTTCATTGGGATACTCTCTGCAGGCAACCATTTTGCAGACCGGATGGCTGTCAGAAAAACATGGATGCAGTCTAAACTTGTTAGATCATCGAATGTTGTGGCTCGTTTTTTTGTTGCCTTGAATGCAAGGAAGGAAATAAACATACAGTTAAAGAAGGAAGCGGATTTTTATGGTGATATGGTAATTGTGCCGTTCATGGACAATTATGAGCTCGTTGTTTTGAAGACTCTTGCAATATGTGAATATGGTGTTCGGAGGTTATCTGCTAAATATGTTATGAAATGCGATGATGATAATTTTGTAAGAATCGATGCTGTACTGAAGGAGGTTAATAGATTATCTCATGGAAAACCTCTGTACATTGGCAACCTGAATTACTTTCACAAGCCCCTCAGAGTAGGGAAATGGGCTGTCACATATGAGGAATGGCCAGAGGATGACTACCCACCCTATGCAAACGGGCCTGGATATATCATAACGAGAGACATTGCAAACTTTATTGTATCTCAGCACAAGAATCAGACTCTGAGGTTGTTCAAAATGGAAGATGTTAGCATGGGGATGTGGGTTGAACAATTCAATGCTTCTTCACGTGTTCAGTACTCTCATAACTGGAAATTCTGCCAATATGGATGCACAGATGATTACTACACCGCACATTATCAGTCTCCCAGACAAATGCTCTGCATGTGGGACAAACTATTGAAAGGGAAAGTTGAGTGTTGCTCCTTGTGAAGGTGTTAGTATTGTTTTGCAGCAATTGCCTGTACATTTAAGAAATGTTTAGCTGTATTCAAATCCTACCTTGAATGCATTATCCAGCTGTCAATTTTGATGAATGTTTTGAAGACCTCTTCGCTGAAGCTGAATATAAGTTTACAATCATTTCTTACACCCAAAGAAAGCACCTAAGAATGGTACTGTGCTTAGACTCCAATCATTAGGCTTAAAGATGTGGATACCTTGATGTGGGTGGTTGTCCTAAAGTTTCTGTGTGTCTGTAACAGTTATGCAGACAAAATATTCAGGAGTTTCATCCTCTTGTTCACACGGCTTGTAAATTTCATGGACCCATATGGGACAGCCTATTACCATTATAAATGTTTGATCGTTATGCTTAAAGATTAGATGCCTTGACAATAGGCTGTCACTTCCCAAATTTTTATAATGGGAGTAGACATTGTTGTCATGAGTTCCCTCGTTAAATCAGATGTAAATCAGAT

Ace file of the UniGene sp_v2.0_unigene27336

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Galactosyltransferase, putative n=1 Tax=Ricinus communis RepID=B9R916_RICCO	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	27%
Blast2go	transferring glycosyl	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	0.0	79%
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	79%

Source	InterPros	Term	Type	Identity
Sma3	Galectin, carbohydrate recognition domain	IPR001079	-	-
Sma3	Glycosyl transferase, family 31	IPR002659	-	-
Sma3	Ureohydrolase	IPR006035	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVS4

Fln msg: No stop codon before M and low homology subject, your sequence is longer than subject: 556 - 340

Fln protein: MESTLQMNQTRNLTQIEKSAMEAWSLGLKAWKDVEAFAEDGVGTADRWIESCPHSISLSGSELMKSGKIMLLPCGMRLGSSITLVGMPRHAHMENDPKISSLKEGDSSLLVSQFMIELQGLKAVDGEDPPRILHFNPRLKGDWSGKPAIEQNTCYRMQWGSAQRCEGSESSAEDETVDGLPKCEKWLTDNDDRKEEKATWWLNRLMGRAKKSSSIDWPYPFVEGKLFVLTLSAGLEGYHVNVDGRHVTSFPYRTGFVLEDATGFSVNGDIDVHTVVAASLPVSHPSFSPQRLLDMSEKWRAPPLPEGPVDLFIGILSAGNHFADRMAVRKTWMQSKLVRSSNVVARFFVALNARKEINIQLKKEADFYGDMVIVPFMDNYELVVLKTLAICEYGVRRLSAKYVMKCDDDNFVRIDAVLKEVNRLSHGKPLYIGNLNYFHKPLRVGKWAVTYEEWPEDDYPPYANGPGYIITRDIANFIVSQHKNQTLRLFKMEDVSMGMWVEQFNASSRVQYSHNWKFCQYGCTDDYYTAHYQSPRQMLCMWDKLLKGKVECCSL*

Protein Length: 557

Fln nts: GTGTATTTGTTGAGAGAGAAGAGGTTTTTGCAGCCTGGGTATAACAAGGATCTGCTTCATCAAGATGAGAATGAGATAAGAAATGCTCCCCTGAGGCCTCACAAGGACTCGGTCCAACTA_-_ATGGAAAGTACTCTGCAGATGAACCAGACGAGGAATCTGACCCAGATTGAGAAGTCGGCAATGGAGGCATGGAGTCTGGGATTGAAGGCATGGAAGGATGTGGAAGCCTTTGCGGAGGACGGGGTTGGAACCGCAGACCGCTGGATTGAGTCATGCCCCCATTCGATCTCCCTGAGCGGTTCGGAATTGATGAAATCAGGAAAGATAATGCTTCTCCCCTGTGGAATGAGATTGGGTTCTTCCATAACATTGGTGGGAATGCCCAGACATGCCCACATGGAAAATGATCCCAAGATATCTAGTTTGAAGGAGGGGGATTCCTCATTGTTGGTTTCTCAGTTCATGATTGAATTGCAGGGGTTAAAAGCCGTGGATGGGGAGGACCCACCTAGGATTTTGCACTTCAATCCGAGGTTGAAGGGAGATTGGAGTGGAAAGCCTGCTATAGAGCAGAATACATGTTACAGGATGCAGTGGGGATCTGCGCAGAGGTGCGAGGGCTCAGAATCAAGTGCCGAGGATGAAACAGTTGATGGACTTCCCAAATGTGAAAAGTGGCTTACTGATAATGATGATAGGAAAGAAGAAAAGGCTACATGGTGGCTGAATCGTTTGATGGGGCGTGCAAAGAAGTCGTCATCAATTGATTGGCCATATCCATTTGTGGAGGGAAAATTATTTGTTCTTACATTAAGTGCAGGTTTGGAAGGTTATCATGTGAATGTGGACGGGAGGCATGTGACCTCTTTTCCTTATCGAACAGGATTTGTGCTTGAAGATGCCACTGGCTTCTCTGTAAATGGTGACATTGATGTGCATACAGTTGTTGCTGCTTCCTTGCCTGTCTCACATCCAAGCTTTTCACCTCAAAGACTTCTAGACATGTCAGAAAAATGGAGAGCTCCACCTTTGCCTGAAGGCCCAGTGGATCTTTTCATTGGGATACTCTCTGCAGGCAACCATTTTGCAGACCGGATGGCTGTCAGAAAAACATGGATGCAGTCTAAACTTGTTAGATCATCGAATGTTGTGGCTCGTTTTTTTGTTGCCTTGAATGCAAGGAAGGAAATAAACATACAGTTAAAGAAGGAAGCGGATTTTTATGGTGATATGGTAATTGTGCCGTTCATGGACAATTATGAGCTCGTTGTTTTGAAGACTCTTGCAATATGTGAATATGGTGTTCGGAGGTTATCTGCTAAATATGTTATGAAATGCGATGATGATAATTTTGTAAGAATCGATGCTGTACTGAAGGAGGTTAATAGATTATCTCATGGAAAACCTCTGTACATTGGCAACCTGAATTACTTTCACAAGCCCCTCAGAGTAGGGAAATGGGCTGTCACATATGAGGAATGGCCAGAGGATGACTACCCACCCTATGCAAACGGGCCTGGATATATCATAACGAGAGACATTGCAAACTTTATTGTATCTCAGCACAAGAATCAGACTCTGAGGTTGTTCAAAATGGAAGATGTTAGCATGGGGATGTGGGTTGAACAATTCAATGCTTCTTCACGTGTTCAGTACTCTCATAACTGGAAATTCTGCCAATATGGATGCACAGATGATTACTACACCGCACATTATCAGTCTCCCAGACAAATGCTCTGCATGTGGGACAAACTATTGAAAGGGAAAGTTGAGTGTTGCTCCTTGTGAAGGTGTTAGTATTGTTTTGCAGCAATTGCCTGTACATTTAAGAAATGTTTAGCTGTATTCAAATCCTACCTTGAATGCATTATCCAGCTGTCAATTTTGATGAATGTTTTGAAGACCTCTTCGCTGAAGCTGAATATAAGTTTACAATCATTTCTTACACCCAAAGAAAGCACCTAAGAATGGTACTGTGCTTAGACTCCAATCATTAGGCTTAAAGATGTGGATACCTTGATGTGGGTGGTTGTCCTAAAGTTTCTGTGTGTCTGTAACAGTTATGCAGACAAAATATTCAGGAGTTTCATCCTCTTGTTCACACGGCTTGTAAATTTCATGGACCCATATGGGACAGCCTATTACCATTATAAATGTTTGATCGTTATGCTTAAAGATTAGATGCCTTGACAATAGGCTGTCACTTCCCAAATTTTTATAATGGGAGTAGACATTGTTGTCATGAGTTCCCTCGTTAAATCAGATGTAAATCAGAT

Fln Alignment:

Contig27336___IGILSAGNHFADRMAVRKTWMQS-----KLVRSSNVVARFFVALNAR------KEINIQLKKEADFYGDMVIVPFMDNYELVVLKTLAICEYGVRRLSAKYVMKCDDDNFVRIDAVLKEVNRLSHGKP-LYIGNL---NYFHKPLRVGKWAVTYEEWPEDD---YPPYANGPGYIITRDIANFIVSQHKNQTLRLFKMEDVSMGMWV
A9NVS4_______________VGIMTEFGHRSHRDSIRKSWMPTGTKLRKLEEDKGIIIRFVVGRSANRGDIYDKAIDDENRQTKDFF---ILENHVESSEELPKKPKLYFSNAADTWDADFYVKVQDNVFVNIDK-LGAMLATHWDKPRAYIGCMKSGEVFSNPSH--KW-YEPESWKFGDGKSYFRHASGEMYVVSRAIAQFI--SINNAILQTYAHEDVSVGSWM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain