SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene27308

Length: 1042 nt

Origin of reads: Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene27308

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	jasmonate ZIM-domain protein 1 [Solanum lycopersicum]	-	-	5.0e-09	29%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Blast2go	protein tify	-	-	0.0	55%

Source	InterPros	Term	Type	e value	Identity
Sma3	Tify	IPR010399	-	0.0	-
Sma3	CO/COL/TOC1, conserved site	IPR018467	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P132

Fln msg: your sequence is shorter than subject: 218 - 286

Fln protein: KPEMMQKVLSSIGHSDDKKADFARVEAQDFNSQFEASNHTEILELFPIKPCSSLGSNPEVTENKVSLPFAIGQIDLDSRSVASKAPEQPSTTQLTIFYNGAMNVYDVSAEKAQGIMNLASANSSRNTTFAISSSKIEQISKPLPSNTPSNPVRENQPQTRPLGLEIARKLSLQCFLRKRKERFNRVAPYTTMKPATLPCKAEKESDDQIILSLASPS*

Protein Length: 219

Fln nts: TTAAACCTGAGATGATGCAAAAAGTTCTTTCGTCGATCGGACATTCGGATGACAAGAAGGCTGATTTTGCTCGTGTTGAGGCGCAGGACTTTAATTCACAATTTGAGGCATCGAATCACACAGAAATATTGGAATTGTTTCCAATAAAGCCTTGTTCCTCTCTCGGTTCTAACCCTGAAGTTACAGAAAATAAAGTATCTTTGCCTTTTGCAATCGGCCAAATTGATCTGGATTCGAGATCTGTTGCATCAAAAGCTCCGGAGCAACCATCCACAACTCAACTCACTATTTTTTATAACGGAGCGATGAATGTTTACGATGTCTCGGCTGAGAAGGCTCAAGGCATTATGAATCTTGCCAGCGCCAATAGCTCGAGGAACACAACATTTGCAATTTCCAGCAGTAAAATCGAACAGATATCGAAACCACTGCCTTCCAATACTCCATCGAACCCTGTCCGTGAAAATCAACCTCAAACACGGCCACTAGGCCTGGAAATTGCGAGGAAATTATCTCTGCAATGCTTCCTCCGAAAGCGAAAAGAGAGATTCAACAGAGTGGCCCCTTACACCACGATGAAGCCGGCGACATTGCCTTGCAAAGCAGAGAAGGAATCAGACGACCAGATCATCCTCTCTTTGGCTTCTCCGTCATAA___AATTTTAAATTGCCAGTCAATGCGATTGATTTTAAATGTATCACGTGATGGATCTTTTAATTTCATCACTCCATAATTCTTTTACCTTTAACTGGATATTTTAATGGACGGTCTTACTGAGCGGGGAAACCCGTCCGTATTATATGTTACCCATCTTCACCATGATCGGGGATTTCAAAAAGCACCTACAACTCTAATGTCCATATTGATCATTTTATCACAAAACGACCGTCAAATTCCATTCCGATCGCCACTCAGCTAAACTAATGGCGATCGCAAATTTATTTCTCCAATCAGTGGGCGTCGGTACCTGTACGACAGGAAGCTGCACAGCAATTTCTGGTAGTATTCATGCTACAATTTATTGTACATATTATACCTAATTG

Fln Alignment:

Contig27308___KPEMMQKVLSSIGHSDDKKADFARV--EAQDFNSQFEASNHTEILELFPIKPCSSLGSNPEVTENKVSLPFAIGQIDLDSRS-VASKAPEQPSTTQLTIFYNGAMNVYDVSAEKAQGIMNLASANSSRNTTFA-ISSSKIEQISKPLPSNTPSNPVRENQPQTRPLGLEIARKLSLQCFLRKRKERFNRVAPYTTMKPATLPCKAEKESDDQIILSLASPS*NFKLPVNAID
A9P132_______________KPQMMQKVLSSIGLSEDKNADFALVNRQAEDFNRHSEASSHREMLELFPISTGSGLGSNPRVTENKITLPFAIGQTDPDSSSSVPAKAPEQQSTAQLTIFYNGAMNVYDVSAEKAQAIMRLASANSSRKTRISTISSSKIEQVSKPLPSKPASNAANGNQPQTPPVGLEIAKKLSLQSFLRKRKERFNSVAPYTTMKPVTLPSKAEKESDDQIRLSLASSSQNFKMSVNAID

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
581			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain