SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene27301

Length: 822 nt

Origin of reads: Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene27301

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	golgi complex component-related protein [Arabidopsis thaliana] dbj\|BAB09754.1\| unnamed protein product [Arabidopsis thaliana] gb\|AED96080.1\| golgi complex component-related protein [Arabidopsis thaliana]	-	-	58%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	62%
Blast2go	conserved oligomeric golgi complex subunit 7-like	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	protein retention in Golgi apparatus	GO:0045053	Biological Process	73%
Blast2go	Golgi organization	GO:0007030	Biological Process	73%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	73%
Blast2go	cell growth	GO:0016049	Biological Process	73%
Blast2go	shoot morphogenesis	GO:0010016	Biological Process	73%
Blast2go	meristem structural organization	GO:0009933	Biological Process	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Conserved oligomeric Golgi complex, subunit 7	IPR019335	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9GVE7

Fln msg: Distance to subject end: 45 aas, your sequence is shorter than subject: 273 - 788

Fln protein: TGSDKKEGLHGGNLLDMVSDEEEWSIVQGALQLLTVADGLSSRSSVFEASLRATLARLNTTLQISSVHANVSQANASGIDVSGSEELSKAGSPRLDMAALRLMDAPEKARRLSNLLEQARDPRFHALPHTSQRVGAFSNAVNELVYEVLILKVRQRIKDVSRMAIWTSAKEKALSSSADVQIGEYLLTLPQQLEPLVLDAGTTGLNTNAEANTDEAQFFATEWMFKVAEGATALYIEQLRGIQSLSDHGAQQLSVDIEYLCNVLSALSMPIPP

Protein Length: 274

Fln nts: AAACAGGATCAGACAAAAAGGAAGGATTGCATGGTGGAAACTTATTAGACATGGTTTCAGATGAAGAGGAATGGTCAATAGTGCAAGGAGCTTTACAGCTTCTTACTGTTGCTGATGGTCTAAGCAGCCGTTCATCTGTTTTTGAAGCATCTCTGCGTGCTACTTTAGCAAGATTAAACACCACACTGCAGATTTCTAGTGTTCATGCAAATGTTAGTCAAGCCAATGCTTCTGGCATAGATGTTAGTGGGAGTGAAGAACTATCCAAAGCAGGTTCACCTAGACTTGATATGGCAGCTTTGCGGTTAATGGATGCACCTGAAAAGGCTAGGAGGCTTTCCAATCTACTGGAGCAGGCAAGGGATCCTCGATTTCATGCTCTTCCACATACTTCTCAAAGGGTTGGAGCTTTCTCAAATGCTGTCAATGAACTTGTTTATGAGGTTCTGATATTAAAAGTTCGGCAAAGGATCAAAGATGTATCTAGAATGGCAATCTGGACGTCAGCTAAAGAAAAAGCATTGTCTTCTTCAGCTGACGTCCAGATTGGTGAATATCTTCTTACTTTACCTCAACAACTAGAGCCTCTTGTATTGGATGCTGGGACAACAGGATTGAATACCAATGCGGAGGCAAACACTGATGAAGCTCAATTTTTTGCAACTGAGTGGATGTTCAAGGTTGCAGAAGGTGCCACAGCCCTTTACATTGAACAATTGCGAGGTATTCAGTCATTAAGTGATCACGGAGCTCAACAACTATCAGTAGATATTGAATATCTCTGTAATGTACTATCTGCTCTTTCAATGCCAATTCCTCCAG

Fln Alignment:

Contig27301___TGSDKKEGLHGGNLLDMVSDEEEWSIVQGALQLLTVADGLSSRSSVFEASXXXXXXXXXXXXQISSVHANVSQANASGIDVSGSEELSKAGSPRLDMAALRLMDAPEKARRLSNLLEQARDPRFHALPHTSQRVGAFSNAVNELVYEVLILKVRQRIKDVSRMAIWTSAKE---------KALSSSADVQIGEYLLTLPQQLEPLVLDAGTTGLNTNAEANTDEAQFFATEWMFKVAEGATALYIEQLRGIQSLSDHGAQQLSVDIEYLCNVLSALSMPIPP
B9GVE7_______________TSLEKKEGSQNARKVDMVSNEEEWSIVQGALQILTVADCLTSRSSVFEASLRSTLARISTSLSFSVFGSSLDQKQSHMTIIDGNGEPSLGQRAALDVAVVRLVDAPEKARKLFNLLDQSKDPRFHALPLASQRVSAFADAVNELVYDVLISKVRQRLSDVSRLPIWSAVDEHSSFRLPTFSAYPQSYVTSVGEYLLTLPQQLEPL-----ADGISNN-DANNEEAQFFATEWMFKVAEGATALYMEQLRGIQYITDRGAQQLSVDIEYLSNVLSALSMPIPP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain