SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene27281

Length: 1757 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene27281 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin-protein ligase, putative n=1 Tax=Ricinus communis RepID=B9SG36_RICCO	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	49%
Blast2go	u-box domain-containing protein 4-like	-	-	72%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	ThiJ/PfpI	IPR002818	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	Cyclin, C-terminal	IPR004367	-	-
Sma3		IPR006670	-	-
Sma3	Cyclin, N-terminal	IPR006671	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Cyclin-like	IPR013763	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PSB5

Fln msg: your sequence is shorter than subject: 430 - 497

Fln protein: DKNNNSGFLALENSSSFPMRLSNVSSATSSGDVSLGPSSSYLADAVNSLDFSLAFSDLSSYSSDISGELQRLATISSPPPVCPPKETASQAKWIGRFVKSRHLEEHGQSRSARHVSPLLKTAVATSGTLETENLEIIFKSLVEDLESTSTELQRKAAAQLRLYAKNNMENRIMIANVGAVKPLVSLLHSVDPLTQENAVTALLNLSLYENNKFEITEAGAIKPLIHVLKSGTSTAKENAACTLLSLSLIEDNKVTIGASGAIPPLVALLINGSLRGKKDAATTLYTLSSLRENKERAIRAGVIRPLVDLMAEPSTGMVDKSAVLLGNLASIPEGKTVIVDEGGIPVLVEVVEVGSPRGKEHATATLLQLCEDSYLHRTLVLREGAIPPLVALSQSGTTRAKQKAVTLLQYLREPRQGSLRAQHSDFSLT*

Protein Length: 431

Fln nts: GATAAGAACAACAATAGTGGTTTTTTGGCCTTAGAGAACTCAAGTTCTTTTCCAATGAGGCTATCAAATGTTTCCTCTGCCACTAGTAGCGGCGATGTTAGCTTGGGCCCGTCTTCTTCTTATCTTGCTGATGCGGTTAATTCCCTAGACTTCTCTCTAGCTTTCAGTGATTTGTCTTCCTACAGCAGTGATATTTCTGGAGAATTACAGAGGCTGGCAACAATTTCATCCCCACCTCCAGTTTGCCCTCCAAAGGAGACTGCATCTCAGGCCAAGTGGATAGGTAGATTTGTGAAGTCGAGACATTTAGAAGAACACGGGCAAAGTAGGAGCGCGCGGCATGTATCGCCATTATTAAAAACAGCAGTTGCAACATCAGGTACTCTTGAAACTGAAAATTTGGAGATTATTTTTAAAAGTTTGGTAGAAGATTTGGAATCAACATCAACGGAGTTGCAGAGGAAGGCAGCAGCACAGTTGAGGTTATATGCGAAAAATAACATGGAAAATAGGATTATGATAGCTAATGTAGGGGCTGTAAAGCCTTTAGTATCATTGTTACATTCTGTGGATCCTCTAACACAGGAAAATGCAGTCACTGCTCTGTTGAATTTGTCTCTTTATGAAAACAACAAGTTCGAAATAACAGAAGCTGGAGCTATCAAGCCTCTTATACATGTACTAAAGTCAGGAACATCAACAGCTAAAGAGAATGCAGCTTGTACCCTTTTGAGTCTGTCACTCATAGAGGATAATAAGGTTACAATAGGAGCCTCCGGTGCGATTCCTCCCTTGGTAGCTCTGCTTATTAATGGTTCCTTAAGAGGGAAAAAAGATGCAGCTACAACCCTTTACACTCTTTCCTCTCTTCGGGAGAATAAGGAGAGAGCCATCCGTGCAGGTGTAATCAGACCACTTGTGGATCTCATGGCAGAACCTTCCACTGGTATGGTGGATAAATCGGCAGTTCTGCTCGGCAACCTTGCAAGCATTCCTGAAGGAAAAACTGTCATTGTCGATGAAGGAGGCATACCTGTCTTGGTGGAAGTAGTGGAGGTGGGTTCTCCAAGAGGAAAGGAACATGCGACTGCAACACTTCTACAACTCTGTGAAGACAGTTACCTCCATCGTACTTTAGTATTACGCGAAGGGGCGATACCTCCTCTGGTTGCATTGTCACAGTCAGGCACAACGCGGGCAAAACAAAAGGCCGTGACTCTTCTTCAGTACTTACGGGAACCAAGACAAGGGAGCCTTAGAGCGCAGCACTCGGATTTTTCGTTAACTTGA___TCAGGAACTCTGAGGGGCAAACTCCCCACCGTGACATAAAGATTGTAACGTTCTGAGTAACGGGTTGTAAATATGAATAGCATTGTAATTCTTGTGAGTTCCATAACATTACCTCAAAAGCTTGTGTGTCATAGGGTGTTTCACAGAAAAAATATTCAATAATTCTACACATTGTTTCAGAGTGACAGTTTTACAGGTAGCAAGTTGGCTTGCAGTTCCTAGTGTTGTTCAAAATTTGCTGTCAGCAGATCCATGAATTTCTGGTTGAAATTTGGTGATTTCAGTGGCATTCTGGTGTCTGTATGCGTATTATTTTTATGTACAGAAAAATGAAAGCAAGGTTGTTGCTTATCTATGAAGGTGTAAACTGTGCATTGCTTTTACAAATTTAACCCTCTGCGGGATTTGATGGAAGCATGACTGCAAAAGATAGCAAAGCAGTACAAAGCTTTTATATAAAATCATTT

Fln Alignment:

Contig27281___LVEDLESTSTELQRKAAAQLRLYAKNNMENRIMIANVGAVKPLVSLLHSVDPLTQENAVTALLNLSLYENNKFEITEAGAIKPLIHVLKSGTSTAKENAACTLLSLSLIEDNKVTIGASGAIPPLVALLINGSLRGKKDAATTLYTLSSLRENKERAIRAGVIRPLVDLMAEPSTGMVDKSAVLLGNLASIPEGKTVIVDEGGIPVLVEVVEVGSPRGKEHATATLLQLCEDSYLHRTLVLREGAIPPLVALSQSGTTRAKQKAVTLLQYL
C0PSB5_______________LVQQLYSRQIDVQRAAAEEIRLLAKRNADNRLLIAEAGAIPQLVKLLSSTDMKTQEHAVTALLNLSIHSSNKGFIVQAGAINRIIDVLKHGSTEARENAAATLFSLSVVDENKVIIGASGAIPPLVDLLRDGTVRGKKDAATAIFNLSIYQGNKFRAVRAGVVPPLIALLVDQSIGMVDEALAILAILATHQEGRIAIGQQSAIDILVELIHSGSARNKENAAAVLLALGMNDSSHLLAAMQLGVFEYLIELAQNGTARARRKARGLLDLI

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
214	33		66		0.997452
228	66			33	0.997452
232	66			33	0.997452
461	33		66		0.997452
701	66	33			0.997452
702	33	66			0.997452
1480		75		25	0.996473
1500	20		80		0.995493
1559		11		88	0.923564
1738	75			25	0.996473
1739	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain