SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene27262

Length: 956 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene27262 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	V-type proton ATPase subunit G 1 n=3 Tax=Solanaceae RepID=VATG1_TOBAC	-	-	1.0e-35	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	vacuolar atp synthase subunit g	-	-	0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	87%
Blast2go	plasma membrane	GO:0005886	Cellular Component	87%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Vacuolar (H+)-ATPase G subunit	IPR005124	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
530		91	8		0.999842
535	8		91		0.999842
536	90	9			0.999872
537	9			90	0.999872
543	90		9		0.999872
548		90	9		0.999898
620		90	9		0.90298
622	9			90	0.90298
623		9	90		0.90298
625	9			90	0.90298
627			9	90	0.90298
674	11	88			0.992527
827			85	14	0.994477
830	85			14	0.994477
831	28		71		1.0
832	14		85		0.994477
834	14	85			0.994477
836		14	85		0.994477
837	57	14	28		1.0
839	14	57		28	1.0
844		14	85		0.994477
845	14			85	0.994477
848	14		85		0.994477
849	85	14			0.994477
873		80		20	0.996423
875	40	40			1.0
878	40	40	20		1.0
879	40			60	1.0
880	80		20		0.996423
881	20			80	0.996423
882		20	80		0.996423
884	80		20		0.996423
885	80	20			0.996423
886	40	20		40	1.0
887	60			40	1.0
888	60		40		1.0
889		80	20		0.996423
890			20	80	0.996423
896			20	80	0.996423
898	75	25			0.997389
899	25		75		0.997389

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain