SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene27122

Length: 2193 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene27122
GTTAGATGCAAATGTTAAGTTAGAACACAAGCCAGAATCTCGAGCAGATTCAAGACAAATCTGCTCCTACAAGAATTTTGAAAATCATCGAATGGCATGTGAAGTACTTGTTGAACTTGCTGACTCTGTAGTAGATTGTCACAGTCCATCTGTAGGTGAAGAACAATCTACATATGAAATTCAAGGGACATTCTCTTGCCCAAATGCAGGTATAGCTTATGTTTATAGAAATGAAAATATGGGTTCACCCAATAAATCACAAATTGAGATGGACATACACAAGCCTCTCAGCAAAATGCGAAAGGCTGTAGAAGCAAGCAGAACTGGAGATTGTAATGCAAGTTTTGAGGAATCTCCATGCAGTGGAAATCATAAACTGTTGTTTAGGGATGAACCGCACCAGTGTTCATCACCAAAGGCTACCTCAACTAATAGAACATATCCCAGCAGTTGGGGAAGGTATAATTCTCCTACCCCATCTTGGGGTGGAAGAGTTGTAGGAAGGAAACAAATCAAAGCATATCCTAAAGAAAGCAATTGCAATAGCAGCGAAGAATTGGATGCACTTCTTAGCATTTTTGAAGGTGGTGGGATCCTGTATTGCCACATGACTTTTGAAGGATTGCTGGATGTGCGGAAAAGGCTGGAGGAATTAGGTTTCTCATGCAAATCAGTATATGATGGTCTGTGGCTGCAGATGCTTCTGAGACACCAAGTCCAAGTGGTAGCTGCTGATACATGCAATAATTGCTGCCATGCAAGGCAGTCTTGCAGATGCAGGCAGAGTTTTGATGTATTTTCACATGGTCGAACCAATGACAGTTTTTACAGGGACGATCGACAAAGAATTATTGGAGCTGGTACCGTGGGAAGTCTTTATGGAGGTGACACATCGGGAGGAGCAAATGTGTCATCTGTACCAGCACGTGTACGTGTACGAGCAGCTGTTGATGGTCTTGCAGGCATTGGACGGGGCTCAACCTTTGTACCCCCAGATGTTGCTTGGCCGCCAACACGGGTTGTGTTTTCCCGTGTTCCTTATGGATTAGGAAGTAGGAATACCCAACACAACCTGGCAAATGAACAGTCAGAAGGGAGGGTTGACCTTGGAGAACTAGATTTATCAAGAGAAGGTTTGACAGCAGCTGTCGGGCTAAGTCAGGGGACTGGCAATGGTGTTCCAGTTCATTCAGATCAAACGCTAAGAATTGATGACCAACGTTCACATTGTCGGGTAGTTAGAGACACTGCAGGAGCCACTAGTAGCAGTAATATTGCTATGCAGAGAGTTGATCCAGAAGAACATCCTCTTGGACAGGAGTGGGAGACAGCTCAGGACACTCCTATTTCCATGGACCTGCAAACACCATTACGAGATTTCCCACCTTTCCGATTTGGGGTGGAATTTGAGGATGTCCATAGACTGGTTGATGGTCAAGCAAAGCATTCACCTGAGGTTTTCTATGCAGGCTCTCTATGGAAGGTCAGCGTGCAGGCTTTAATGATGAAGATCCGCAAGGTCGCCGTACACTTGGATTATTTTTACATCGCCGCAAGGCAGAGAATATGGATGCTCTACAGAAGGTCCATCTGTATTTAGATACTAGAGAAAAAGTGACTGTTCGGTATCAGTTGATTTGTCCATCAAAGAGAGAAGTTATGGTGTTTGGCAGCCTCACACAGTCAGGAACCTTGCTACCTAAAGCACCTAAAGGCTGGGGTTGGCGGACAGCCTTGCTATTTGATGAGCTTTCAGATCTTCTCCAGGGAGGATCTCTACGTGTGGCTGCTGTCATACAGCTGGTCTAAAGTCCATGATAGATAATTATTGAAGATAAACAATGACTAGATTATTTCACTATAATTTTCACAGGTAAAAGATCGAGATCTTTCTCAGTCCATTTGGTATGTAACATCTGTGACTTGAAGCTTGCCGACATAGTATTTAAGGATGAGTGTCCACATATGCGTATCTTTTTAAAGTCAAAGTATCTGAATATTGAAGAAAGCATCCGTGGATACATGACCTTATGATATTGTAAAAGGCCAGGATTGTAATTGCCACTCCTGACCTTTGGCAGTACTGTCATCATATTATTCCATTAATGACTACCTCGTAGACTTTCTTTGCAAGTTTTGTAATGTAAATGATAGGGGATTGGAAGGCTCAATCAAAGCTTCAAGATCATTAAC

Ace file of the UniGene sp_v2.0_unigene27122 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	45%
Blast2go	kelch-like protein diablo	-	-	62%

Source	InterPros	Term	Type	Identity
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	BTB/POZ	IPR013069	-	-
Sma3		IPR013089	-	-
Sma3	Deoxyribonuclease, TatD-related, conserved site	IPR018228	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9HXU8

Fln msg: Separated hits, possible frame ERROR between 1519 and 1534, your sequence is shorter than subject: 603 - 679

Fln protein: LDANVKLEHKPESRADSRQICSYKNFENHRMACEVLVELADSVVDCHSPSVGEEQSTYEIQGTFSCPNAGIAYVYRNENMGSPNKSQIEMDIHKPLSKMRKAVEASRTGDCNASFEESPCSGNHKLLFRDEPHQCSSPKATSTNRTYPSSWGRYNSPTPSWGGRVVGRKQIKAYPKESNCNSSEELDALLSIFEGGGILYCHMTFEGLLDVRKRLEELGFSCKSVYDGLWLQMLLRHQVQVVAADTCNNCCHARQSCRCRQSFDVFSHGRTNDSFYRDDRQRIIGAGTVGSLYGGDTSGGANVSSVPARVRVRAAVDGLAGIGRGSTFVPPDVAWPPTRVVFSRVPYGLGSRNTQHNLANEQSEGRVDLGELDLSREGLTAAVGLSQGTGNGVPVHSDQTLRIDDQRSHCRVVRDTAGATSSSNIAMQRVDPEEHPLGQEWETAQDTPISMDLQTPLRDFPPFRFGVEFEDVHRLVDGQAKHSPEVFYAGSLWKVSVQALMMKIRxxxxxxGLFLHRRKAENMDALQKVHLYLDTREKVTVRYQLICPSKREVMVFGSLTQSGTLLPKAPKGWGWRTALLFDELSDLLQGGSLRVAAVIQLV*

Protein Length: 604

Fln nts: GTTAGATGCAAATGTTAAGTTAGAACACAAGCCAGAATCTCGAGCAGATTCAAGACAAATCTGCTCCTACAAGAATTTTGAAAATCATCGAATGGCATGTGAAGTACTTGTTGAACTTGCTGACTCTGTAGTAGATTGTCACAGTCCATCTGTAGGTGAAGAACAATCTACATATGAAATTCAAGGGACATTCTCTTGCCCAAATGCAGGTATAGCTTATGTTTATAGAAATGAAAATATGGGTTCACCCAATAAATCACAAATTGAGATGGACATACACAAGCCTCTCAGCAAAATGCGAAAGGCTGTAGAAGCAAGCAGAACTGGAGATTGTAATGCAAGTTTTGAGGAATCTCCATGCAGTGGAAATCATAAACTGTTGTTTAGGGATGAACCGCACCAGTGTTCATCACCAAAGGCTACCTCAACTAATAGAACATATCCCAGCAGTTGGGGAAGGTATAATTCTCCTACCCCATCTTGGGGTGGAAGAGTTGTAGGAAGGAAACAAATCAAAGCATATCCTAAAGAAAGCAATTGCAATAGCAGCGAAGAATTGGATGCACTTCTTAGCATTTTTGAAGGTGGTGGGATCCTGTATTGCCACATGACTTTTGAAGGATTGCTGGATGTGCGGAAAAGGCTGGAGGAATTAGGTTTCTCATGCAAATCAGTATATGATGGTCTGTGGCTGCAGATGCTTCTGAGACACCAAGTCCAAGTGGTAGCTGCTGATACATGCAATAATTGCTGCCATGCAAGGCAGTCTTGCAGATGCAGGCAGAGTTTTGATGTATTTTCACATGGTCGAACCAATGACAGTTTTTACAGGGACGATCGACAAAGAATTATTGGAGCTGGTACCGTGGGAAGTCTTTATGGAGGTGACACATCGGGAGGAGCAAATGTGTCATCTGTACCAGCACGTGTACGTGTACGAGCAGCTGTTGATGGTCTTGCAGGCATTGGACGGGGCTCAACCTTTGTACCCCCAGATGTTGCTTGGCCGCCAACACGGGTTGTGTTTTCCCGTGTTCCTTATGGATTAGGAAGTAGGAATACCCAACACAACCTGGCAAATGAACAGTCAGAAGGGAGGGTTGACCTTGGAGAACTAGATTTATCAAGAGAAGGTTTGACAGCAGCTGTCGGGCTAAGTCAGGGGACTGGCAATGGTGTTCCAGTTCATTCAGATCAAACGCTAAGAATTGATGACCAACGTTCACATTGTCGGGTAGTTAGAGACACTGCAGGAGCCACTAGTAGCAGTAATATTGCTATGCAGAGAGTTGATCCAGAAGAACATCCTCTTGGACAGGAGTGGGAGACAGCTCAGGACACTCCTATTTCCATGGACCTGCAAACACCATTACGAGATTTCCCACCTTTCCGATTTGGGGTGGAATTTGAGGATGTCCATAGACTGGTTGATGGTCAAGCAAAGCATTCACCTGAGGTTTTCTATGCAGGCTCTCTATGGAAGGTCAGCGTGCAGGCTTTAATGATGAAGATCCGCAAxxxxxxxxxxxxxxxTGGATTATTTTTACATCGCCGCAAGGCAGAGAATATGGATGCTCTACAGAAGGTCCATCTGTATTTAGATACTAGAGAAAAAGTGACTGTTCGGTATCAGTTGATTTGTCCATCAAAGAGAGAAGTTATGGTGTTTGGCAGCCTCACACAGTCAGGAACCTTGCTACCTAAAGCACCTAAAGGCTGGGGTTGGCGGACAGCCTTGCTATTTGATGAGCTTTCAGATCTTCTCCAGGGAGGATCTCTACGTGTGGCTGCTGTCATACAGCTGGTCTAAAGTCCATGATAGATAATTATTGAAGATAAACAATGACTAGATTATTTCACTATAATTTTCACAGGTAAAAGATCGAGATCTTTCTCAGTCCATTTGGTATGTAACATCTGTGACTTGAAGCTTGCCGACATAGTATTTAAGGATGAGTGTCCACATATGCGTATCTTTTTAAAGTCAAAGTATCTGAATATTGAAGAAAGCATCCGTGGATACATGACCTTATGATATTGTAAAAGGCCAGGATTGTAATTGCCACTCCTGACCTTTGGCAGTACTGTCATCATATTATTCCATTAATGACTACCTCGTAGACTTTCTTTGCAAGTTTTGTAATGTAAATGATAGGGGATTGGAAGGCTCAATCAAAGCTTCAAGATCATTAAC

Fln Alignment:

Contig27122___ENHRMACEVLVELADSVVDCH-SPSVGEEQSTYEIQGTFSCPNAGIAYVYRNENMGSPNKSQIEMDIHKPLSKMRKAVEASRTGDC--NASFEESPCSGNHKLLFRDEPHQCSSPKATSTNRTYPSSWGRYNSPTPSWGGRVVGRKQIKAYPKESNCN-SSEELDALLSIFEGGGILYCHMTFEGLLDVRKRLEELGFSCKSVYDGLWLQMLLRHQVQVVAADTCNNCCHARQSCRCRQSFDVFSHGRTNDSFYRDDRQRIIGAGTVGSLYGGDT-SGGANVSSVPXXXXXXXXVDGLAGIGRGSTFVPPDVAWPPTRVVFSRVPYGLGSRNTQHNLANEQSEGRVDLGELDLSREGLTAAVGLSQGTGNGVPVHSDQTLRIDDQRSHCRVVRDTAGATSSSNIAMQRVDPEEHPLGQEWETAQDTPISMDLQTPLRDFPPFRFGVEFEDVHRLVDGQAKHSPEVFYAGSLWKV---------SVQALMMKIRKxxxxxGLFLHRRKAENMDALQKVHLYLDTREKVTVRYQLICPSKREVMVFGSLTQSGTLLPKAPKGWGWRTALLFDELSDLLQGGSLRVAAVIQLV
B9HXU8_______________EGHDAARNLLVELADGVVDFQPGVSVSKQQAQQA--------------AYTQSNLGTLHPC--DMGQSSSLSNSFSVMNANGTSLAMEGPSEDGSYHLNNNNWLASNQSRNCNSLDP-SGNGLILNDWERCDMPQLSWGGRVVGRRQVKGYAK-GNCGVHREDYDTFINIFEGGSLLYCNMSFEALLNVRKQLEELGFPCKAVNDGLWLQMLLSQRVQEIGADTCKMCCLMSMACTCRQPFGI-SHGVATTGYYMQEHEHHNSSGGVTNVYVADSGQGEGNGLFRPVRVHVRGPIDGLAGIGRGTTFVPA-AAWPPTRFVFSRVPFGMGNRNCQQSVASDDSENRTDHNG-DLSGDGLTALVGLSQG-GSNSTIHGEHMERGYETDLHGRLSKTSVSAPSTSGIAVQMLESPEHAIGFEWENANNS-ISLDMKTPLSHFPPFRFGVEFEDVHRLSDGQVKHSPEIFYAGSLWKVFKISAVHLLVFKPLMMKILKxxxxxGLFLHRRKAEITDSLRKVHIYVDSREKVTARFQLICPSKREVMVFGRLKQRGTLLPKAPKGWGWRAALFFDELAEQLQNGTLRVAAVVQLV

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1849	16			83	0.994512
1852	83			16	0.994512
1853	83			16	0.994512
1884		20		80	0.995493
1885		20		80	0.995493
1960	33			66	0.997452
1962			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain