SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene27113

Length: 546 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene27113
GAAGCATTACTAAATCAATTAACACATTTAACTGCAAGACCATAAACTCATAATAGATGATTGTTGAACCGGAACAACATGTACTAGATTTTATCGAGGCTGGGGAAGACATTGTTAGTGTCCACTATGAACAATCTTCCACTATCCATTTGTACTGAACAGTAAATCAGGTGGGATTATTATCTAATATCTCTATTTGAGAGACAGTTTGGTGGAAGTTAATAGCTCAAGATTTATGATGTACTGGTAACTGAATACATTACTAGATACTAACTAGAACTGCTGTAGAGATCTACCAAACTGACTTTCGCAGTCTGTTTATAGTTCAGTTATGATGCATTAGCCTTTCCCTTTCAAGACCTGGCATGTTAATATCATTATTCAAGAACAAAACTGCCATTAAATTGATAGTGCTTAGTTCACAGGCATGTGCATATGGCCACAGAGAATGACATAGATTAAGTCGTTTAATGGTTATTAGTAGTTATGCAATTCTGTGCAGCCCACTCGGACTTCATGAGGATAAATTTGTGAAGAACAATCCTG

Ace file of the UniGene sp_v2.0_unigene27113

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribulose-phosphate 3-epimerase n=1 Tax=Ricinus communis RepID=B9RLW1_RICCO	-	-	2.0e-08	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Blast2go	ribulose-phosphate 3- chloroplastic-like	-	-	5.95485e-10	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to cold	GO:0009409	Biological Process	5.95485e-10	86%
Blast2go	metabolic process	GO:0008152	Biological Process	5.95485e-10	86%
Blast2go	response to nematode	GO:0009624	Biological Process	5.95485e-10	86%
Blast2go	protein binding	GO:0005515	Molecular Function	5.95485e-10	86%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	5.95485e-10	86%
Blast2go	thylakoid	GO:0009579	Cellular Component	5.95485e-10	86%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	5.95485e-10	86%
Blast2go	stromule	GO:0010319	Cellular Component	5.95485e-10	86%
Blast2go	apoplast	GO:0048046	Cellular Component	5.95485e-10	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribulose-phosphate 3-epimerase	IPR000056	-	0.0	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NP17

Fln msg: Unexpected stop codon in the beginning of your sequence, query STOP codon too far from subject stop. Distance to subject end: 126 aas, putative chimeric sequence, your sequence is shorter than subject: 52 - 292

Fln protein: SITKSINTFNCKTINS**MIVEPEQHVLDFIEAGEDIVSVHYEQSSTIHLY*

Protein Length: 53

Fln nts: GAAGCATTACTAAATCAATTAACACATTTAACTGCAAGACCATAAACTCATAATAGATGATTGTTGAACCGGAACAACATGTACTAGATTTTATCGAGGCTGGGGAAGACATTGTTAGTGTCCACTATGAACAATCTTCCACTATCCATTTGTACTGA___ACAGTAAATCAGGTGGGATTATTATCTAATATCTCTATTTGAGAGACAGTTTGGTGGAAGTTAATAGCTCAAGATTTATGATGTACTGGTAACTGAATACATTACTAGATACTAACTAGAACTGCTGTAGAGATCTACCAAACTGACTTTCGCAGTCTGTTTATAGTTCAGTTATGATGCATTAGCCTTTCCCTTTCAAGACCTGGCATGTTAATATCATTATTCAAGAACAAAACTGCCATTAAATTGATAGTGCTTAGTTCACAGGCATGTGCATATGGCCACAGAGAATGACATAGATTAAGTCGTTTAATGGTTATTAGTAGTTATGCAATTCTGTGCAGCCCACTCGGACTTCATGAGGATAAATTTGTGAAGAACAATCCTG

Fln Alignment:

Contig27113___MIVEPEQHVLDFIEAGEDIVSVHYEQSSTIHLY*TVNQV
A9NP17_______________MIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQI

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
247			33	66	0.997452
251		33		66	0.997452
273	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain