SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene27104

Length: 1741 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene27104 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ribonucleoside-diphosphate reductase small chain C [Arabidopsis thaliana] sp\|Q9LSD0.1\|RIR2C_ARATH RecName: Full=Ribonucleoside-diphosphate reductase small chain C; AltName: Full=Ribonucleoside-diphosphate reductase TSO2 subunit; AltName: Full=Ribonucleoti	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	protein	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	DNA replication	GO:0006260	Biological Process	89%
Blast2go	multicellular organismal development	GO:0007275	Biological Process	89%
Blast2go	regulation of cell cycle	GO:0051726	Biological Process	89%
Blast2go	programmed cell death	GO:0012501	Biological Process	89%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribonucleotide reductase	IPR000358	-	0.0	-
Sma3	Ribonucleotide reductase-related	IPR012348	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACY5

Fln msg: your sequence is longer than subject: 339 - 289

Fln protein: MGTTDAMNPEVLKEEEPILMENPQRFCMFPIKYNEVWEMYKKAEASFWTVEEVDLSQDLYQWVNLTKNEKHFISHVLAFFAASDGIVLENLAGRFLNDVQIPEARAFYGFQIAIENIHSEMYSLLLETYIRDSKEKARLFNAINTIPCVARKAEWAMRWIQSSGSFAERIVAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLKRKLSEERVKEIVCDAVEIEREFVCEALSCDLVGMNATLMSQYINFIADRLLFALGHGKMYHVDNPFDWMDLISLQGKTNFFERRVGDYQKASIMSSIGNTESNHVFKMDEDF*

Protein Length: 340

Fln nts: ATGGGGAGAGTTGAATGGGGAAGGGTAGGGTATGCCTACTCTCCTCCTCTGGGCACCAGCATTGCGGTTACGAGGAGAAATCAGCTTCGGTTTCTTCTTCTGCAATCTCATACTCCTCTTTCCCCTCCAACAGTGGTAGAAACGCGATTCTCTGAGTTAACCCCGTAACATTGGCAGCAAATTTATTATTTTCCGTGGGGCCTGGGGGGATTTGGGCGGTGGAATGAGAGTATTTTGTGTGCAGTGAAGGCTGGGAAGAACAAACAGTAAAACAAA_-_ATGGGCACAACAGACGCGATGAACCCAGAGGTTTTAAAGGAGGAAGAACCCATTCTCATGGAGAACCCTCAGAGGTTTTGTATGTTTCCAATCAAATATAATGAGGTCTGGGAAATGTACAAGAAAGCCGAGGCCAGCTTCTGGACAGTGGAGGAAGTTGACCTTTCACAGGACCTATATCAATGGGTAAACCTCACCAAGAACGAAAAACATTTCATTAGCCATGTTTTGGCCTTTTTTGCGGCCTCAGATGGTATTGTTTTGGAGAATTTAGCGGGAAGATTCTTGAATGATGTTCAAATTCCGGAGGCTCGGGCATTCTACGGATTCCAGATTGCCATAGAGAATATTCATTCAGAGATGTACAGCCTACTTCTAGAAACCTACATCAGAGACTCCAAGGAGAAAGCGAGGCTGTTCAATGCCATCAACACTATTCCCTGCGTTGCAAGAAAAGCTGAATGGGCCATGCGATGGATTCAAAGCTCTGGTTCATTTGCTGAGAGAATTGTTGCATTTGCATGTGTTGAGGGTATTTTCTTCTCTGGAAGCTTTTGTGCCATATTTTGGTTGAAGAAACGGGGCTTAATGCCAGGTTTAACTTTTTCAAATGAGCTGATTTCAAGAGATGAGGGTCTTCATTGTGATTTTGCTTGTCTCCTTTATAGTTTGTTGAAGAGGAAACTTAGTGAGGAAAGAGTAAAAGAAATTGTTTGTGATGCAGTGGAAATCGAAAGAGAGTTTGTGTGCGAAGCTCTTTCTTGTGACTTGGTTGGCATGAATGCTACTCTTATGAGCCAGTACATAAATTTTATTGCAGACCGGCTTCTGTTTGCCCTTGGGCATGGCAAGATGTATCATGTTGATAACCCCTTTGACTGGATGGATCTCATTTCATTACAAGGAAAAACAAACTTCTTCGAAAGGAGGGTTGGTGATTATCAGAAGGCTTCCATAATGTCAAGCATAGGAAATACAGAAAGTAACCATGTCTTCAAAATGGATGAAGATTTTTAA___ATTACAGGAGTGAAAGCCTTTTCCTAGATTAAAATTCTAGGTGTATATTAATGGCATATAATTTATCATCTGCAATGTATTCATGAAGTCATTAAAAATTTTTGGTAGTTTTAGACCATAGGAGTACAAGCAATCTCTTGGATCAGAAGTGTAATTCTTCAATTTTGATTCGTTTTGTATGCCCTGAGTCACTTAACGTTGTTAGGCTAAACCCTTTCATAAAAGAGGTCATTTATCTTCACCCAACGTTGTAACGATTATTGTAATAGAGAATTGAACCTTCTGCGTCTCTTTTGTTCAAGTAATATATTAATGCTCTTAAGTTTTTGTAACTTGAGTTGAGGCATCAAACCTTGTTACATGATATTGACAAGTTGACAGATGGATTTGCATTTCAAACAAATAAATTGAATGCTGGTCTGAACCCATTGATAATATTGAAAACTGT

Fln Alignment:

Contig27104___VEEVDLSQDLYQWVNLTKNEKHFISHVLAFFAASDGIVLENLAGRFLNDVQIPEARAFYGFQIAIENIHSEMYSLLLETYIRDSKEKARLFNAINTIPCVARKAEWAMRWIQSSGSFAERIVAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLKRKLSEERVKEIVCDAVEIEREFVCEALSCDLVGMNATLMSQYINFIADRLLFALGHGKMYHVDNPFDWMDLISLQGKTNFFERRVGDYQKASIMSSIGNTESNHVFKMDEDF
D5ACY5_______________MEEVDLSQDLYQWVNLTKNEKHFISHVLAFFAASDGIVLENLAGRFLKDVQIPEARAFYGFQIAIENIHSEMYSLLLETYIRDSKEKARLFNAINTIPCVARKAEWAMRWIQSSGSFAERIVSFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLKSKLSEERVKAIVRDAVDIEREFVCEALSCDLVGMNATLMSQYIKFIADRLLVALGHGKMYHVENPFDWMDLISLQGKTNFFERRVGDYQKASIMSSISNAEGNHVFKMDEDF

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
340	90		10		0.90298
350	77			22	0.999999
361		90		10	0.90298
539	10	89			0.999919
540		89	10		0.999919
542			10	89	0.999919
543	10			89	0.999919
545	10		89		0.999919
546	89		10		0.999919
547	89	10			0.999919
548		10	89		0.999919
552			10	89	0.999919
554		10		89	0.999919
555	10		89		0.999919
556		10		84	0.999846
557			10	89	0.999919
558	10			89	0.999919
559		10		89	0.999919
560			10	89	0.999919
1101		16		83	0.994512
1160		83		16	0.994512
1247	83		16		0.994512
1268	16		83		0.994512
1476		10		90	0.90298
1492		90		10	0.90298
1494		12		87	0.992554
1502	87		12		0.992554
1518		12		87	0.992554
1568		87		12	0.992554
1663		16		83	0.994512
1693		20	80		0.995493
1694	80	20			0.995493
1695		20	80		0.995493
1696		20	80		0.995493
1698			80	20	0.995493
1722	25	75			0.996473
1723		75		25	0.996473
1725	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain