SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene27048

Length: 518 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene27048
ATGGGCGAGAGCAAACCAAAAAGGATGTTGTCTTGAAATATACAGAAGGACTTTGTTGGGTGATGCGCTATTATTATCAAGGAGTGTGCTCATGGCAGTGGTATTATCCATACCATTATGCTCCCTTTGCCTCTGATCTTGTGGGTCTCAGTCAGTTAAAGATTACATTTATTCTTCGGACTCCGTTCAAGCCATTCAATCAGTTAATGGGAGTTCTTCCATCTGCAAGTGCAAATGCACTTCCTGAGCATTACAGGCCATTAATGACTGATCCAAATTCACCTATCATTGACTTTTATCCCACTGATTTTGAAATTGATATGAATGGCAAGCGTTATGCCTGGCAGGGTGTTGCTAAATTACCATTCATTGATGAATCTCGTCTTCTTGCGGAAATTAGCAAGGTTGAAGGCACAATTAACGGAACAAGAAAAATTTGAGAAACAGGTGAAAGGTTTGACTTGCTTTTTGTGATGGCAAGTCACCGCTTAGCTCCAGATATACTTTCTCTCTATAAG

Ace file of the UniGene sp_v2.0_unigene27048 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative 5-3 exoribonuclease [Oryza sativa Japonica Group]	-	-	70%
FL-Next	Isoform 2 of 5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3	-	-	67%
Blast2go	5 -3 exoribonuclease 3-like	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	miRNA catabolic process	GO:0010587	Biological Process	80%
Blast2go	5'-3' exoribonuclease activity	GO:0004534	Molecular Function	80%
Blast2go	nucleus	GO:0005634	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Putative 5-3 exonuclease	IPR004859	-	-
Sma3	5'-3' exoribonuclease 2	IPR017151	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FQ03-2

Fln msg: Distance to subject end: 39 aas, your sequence is shorter than subject: 172 - 763

Fln protein: GREQTKKDVVLKYTEGLCWVMRYYYQGVCSWQWYYPYHYAPFASDLVGLSQLKITFILRTPFKPFNQLMGVLPSASANALPEHYRPLMTDPNSPIIDFYPTDFEIDMNGKRYAWQGVAKLPFIDESRLLAEISKVEGTINGTRKI*ETGERFDLLFVMASHRLAPDILSLYK

Protein Length: 173

Fln nts: ATGGGCGAGAGCAAACCAAAAAGGATGTTGTCTTGAAATATACAGAAGGACTTTGTTGGGTGATGCGCTATTATTATCAAGGAGTGTGCTCATGGCAGTGGTATTATCCATACCATTATGCTCCCTTTGCCTCTGATCTTGTGGGTCTCAGTCAGTTAAAGATTACATTTATTCTTCGGACTCCGTTCAAGCCATTCAATCAGTTAATGGGAGTTCTTCCATCTGCAAGTGCAAATGCACTTCCTGAGCATTACAGGCCATTAATGACTGATCCAAATTCACCTATCATTGACTTTTATCCCACTGATTTTGAAATTGATATGAATGGCAAGCGTTATGCCTGGCAGGGTGTTGCTAAATTACCATTCATTGATGAATCTCGTCTTCTTGCGGAAATTAGCAAGGTTGAAGGCACAATTAACGGAACAAGAAAAATTTGAGAAACAGGTGAAAGGTTTGACTTGCTTTTTGTGATGGCAAGTCACCGCTTAGCTCCAGATATACTTTCTCTCTATAAG

Fln Alignment:

Contig27048___EQTKKDVVLKYTEGLCWVMRYYYQGVCSWQWYYPYHYAPFASDLVGLSQLKITFILRTPFKPFNQLMGVLPSASANALPEHYRPLMTDPNSPIIDFYPTDFEIDMNGKRYAWQGVAKLPFIDESRLLAEISKVEGTINGTRKI*ETGERFDLLFVMASHRLAPDILSL
Q9FQ03-2_____________ERVRKDVVLKYTEGLCWVMHYYMEGVCSWQWFYPYHYAPFASDLKDLGEMDIKFELGTPFKPFNQLLGVFPAASSHALPERYRTLMTDPNSPIIDFYPTDFEVDMNGKRFSWQGIAKLPFIDERRLLEAVSEVEFTLTDEEKR-RNSRMCDMLFIATSHRLAELVFSL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain