SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene26882

Length: 1017 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene26882 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9SNH5_RICCO	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	41%
Blast2go	uncharacterized protein	-	-	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	65%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, PHD-type	IPR001965	-	0.0	-
Sma3	Protein of unknown function DUF1423, plant	IPR004082	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NV71

Fln msg: your sequence is shorter than subject: 332 - 623

Fln protein: VVTLAVTHCSKFDCANNTCSWVGCDFCLHWCHTDCGIRMSYIKPGPSIRGAPGTMEMQFHCVACDHSSEMFGFVKEVFKTCAKDWSEETLAKELDCVRRIFQESEDSRGKKLRNKAEELLAKLDSKNCVPVEVCDSILLFLTECDFNFHGTNSFSGKEPVQHDRKEDACDQFAVAVRESIYKINPISSERVATKTPTVPQTSDVHAGKKAEAMESHYGMGRNNVEIDDLESIVRIKQAEAKMFQARADDARREADGLKRIALAKNDKIEEEYTGKLAMLCLTEAEERRRQKLDELKIIESAQRDYYNMKIRMETDIKELIRKMEMTRRQFL*

Protein Length: 333

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGTTCGAAGTTCGATTGTGCCAACAATACATGTAGCTGGGTTGGCTGTGACTTCTGTTTACATTGGTGTCATACAGATTGTGGGATTCGAATGTCATATATCAAGCCTGGTCCTAGCATTAGAGGAGCACCGGGGACCATGGAGATGCAGTTCCACTGCGTTGCATGTGATCATTCTTCTGAGATGTTTGGGTTTGTGAAGGAGGTGTTTAAAACATGTGCCAAAGACTGGAGTGAGGAGACTCTTGCCAAAGAGCTTGATTGTGTCAGGAGAATTTTTCAAGAAAGCGAGGACTCTAGAGGGAAAAAATTGCGAAACAAGGCTGAGGAGCTGCTGGCTAAACTTGACAGCAAAAACTGTGTCCCTGTAGAGGTCTGCGACAGTATTTTGTTATTTTTGACTGAATGTGATTTTAATTTCCATGGAACAAATTCCTTTTCTGGAAAGGAGCCCGTTCAACATGATAGAAAAGAAGATGCTTGTGATCAATTTGCTGTTGCAGTTCGAGAGTCTATATATAAGATAAACCCTATCTCCAGTGAAAGAGTTGCCACTAAGACTCCAACAGTTCCTCAAACCAGCGATGTACATGCAGGGAAGAAGGCAGAGGCCATGGAATCACACTATGGCATGGGAAGAAACAATGTTGAGATAGATGATCTGGAAAGTATTGTGAGAATCAAGCAAGCTGAGGCTAAGATGTTTCAAGCCCGTGCAGATGATGCTCGCAGAGAGGCAGACGGGCTTAAACGTATTGCACTTGCAAAAAACGATAAAATAGAAGAAGAATATACTGGCAAACTTGCAATGCTATGTCTGACTGAAGCAGAAGAGCGGAGGAGACAAAAGCTTGACGAGTTGAAGATTATAGAAAGTGCCCAGCGTGACTACTATAATATGAAAATAAGGATGGAGACAGACATTAAAGAGTTGATAAGAAAGATGGAAATGACGAGGCGGCAATTCTTGTAG___GGAAACATTAAGAGAGTTGC

Fln Alignment:

Contig26882___CSKFDCANNTCSWVGCDFCLHWCHTDCGIRMSYIKPGPSIRGAPGTMEMQFHCVACDHSSEMFGFVKEVFKTCAKDWSEETLAKELDCVRRIFQESEDSRGKKLRNKAEELLAKLDSKNCVPVEVCDSILLFLTECDFNFHGTNSFSGKEPVQHDRKEDACDQFAVAVRESIYKINPISSE--RVATKTP-TVPQTSDVHAGKKAEAMESHYGMGRNNVEIDDLESIVRIKQAEAKMFQXXXXXXXXXXDGLKRIALAKNDKIEEEYTGKLAMLCLTEAEERRRQKLDELKIIESAQRDYYNMKIRMETDIKELIR
A9NV71_______________CSKFDFEVNTCRWVGCDTCSHWTHTDCAIRAGQISMGTSLKGVAGSSEMLFRCRACKRTSELLGWVKDVFQHCALDWDREALMKEFDCVRRVFHGSEDSKGRKLFWKSEELLESLKNGVADEAAVCKVMQRFFQELETEVVKNVEAEERRMI---APQEACNRIADVVQEVVRKMEAVAEEKARVFKKARLTLDMCDRELEDKSRELAELQFERQRKKQQIEELEAIVRLKQAEADMFQLKADEARREADRLQRIALAKSEKAEEEYASRYLKLRLNEAEAERRYLFEKIQLQEHSRLQPDPSQMLMLCKIQDLLK

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
187		14		85	0.993533
188		14	85		0.993533
191	85			14	0.993533
199	83	16			0.994512
200	16		83		0.994512
223	40		60		1.0
238	83		16		0.994512
325	80	20			0.995493
327	20			80	0.995493
418	25			75	0.996473
419	25			75	0.996473
422	75			25	0.996473
493	80		20		0.995493
518		80		20	0.995493
555	20	80			0.995493
557			80	20	0.995493
558	80		20		0.995493
559	80			20	0.995493
607	16	83			0.994512
608	83			16	0.994512
609	83		16		0.994512
610	83			16	0.994512
762			50	50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain