SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene26776

Length: 1273 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene26776

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Auxin induced-like protein n=8 Tax=Picea sitchensis RepID=A9NV90_PICSI	-	-	1.0e-39	49%
FL-Next	tr=Auxin induced-like protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Blast2go	auxin induced-like protein	-	-	0.0	58%

Source	InterPros	Term	Type	Identity
Sma3	DOMON domain	IPR005018	-	-
Sma3	Cytochrome b561/ferric reductase transmembrane	IPR006593	-	-
Sma3		IPR007613	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: E0Z5V0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 31 aas, your sequence is shorter than subject: 258 - 402

Fln protein: MKGCYFLPLVLVAFLCLHVADSADTACPKTFSGSTGNNATRNYTQCVTLPQLGATLSWTYSPANGSVDLAFRAKPGSSSGWVAWGINPNAKGMVGTQALIALKQANGTMACNTYNITSKRPPLVPSPISFPATDLSSEFENGLITIFAKVVLPSKNRVVNHVWEVGSKAEGLNPSPHAFENSNLESFGSIDFSSTRSSSPSPSSSPSTSPSNSSSPASSGSSSPPSSSHGSITRISVTELVTGLFFLGFSVMKFCGI*

Protein Length: 259

Fln nts: ACCTTGGCTGTCACTCAACTATTAATATCCCCGGGCCCCCAACTTTCTACAAAACCCAGACCTGGCTCTTTAGTTTCTCAGTATCACATTGCACTACTGAGATCTGAAGTGCCTATTTGCCTGATACATCTCAGTACCTTGAGCC_-_ATGAAGGGTTGTTATTTTCTGCCATTGGTCCTGGTGGCCTTCCTGTGTCTGCATGTTGCAGATTCTGCAGATACTGCTTGCCCCAAGACTTTCAGTGGGAGTACAGGCAACAATGCCACAAGAAATTATACCCAATGTGTGACGCTTCCGCAGCTGGGTGCAACTCTGTCATGGACTTATTCTCCTGCAAATGGGTCTGTGGATTTGGCATTCAGAGCTAAACCGGGGAGCTCCTCGGGATGGGTGGCGTGGGGAATAAATCCTAATGCCAAAGGCATGGTGGGCACACAGGCTCTCATTGCCCTGAAGCAAGCCAATGGCACCATGGCCTGCAACACCTACAATATTACTTCCAAGAGGCCACCACTGGTGCCCTCCCCCATAAGTTTCCCTGCAACAGATCTGAGCTCCGAGTTTGAAAATGGGCTGATCACAATATTTGCAAAGGTGGTTCTTCCTTCAAAGAACAGAGTGGTGAATCATGTCTGGGAGGTGGGCAGCAAGGCTGAGGGGCTCAATCCCTCTCCTCATGCCTTTGAGAACTCCAACCTCGAGAGCTTTGGCTCCATTGATTTTTCCTCTACAAGATCCTCTTCCCCCTCCCCCTCCTCCTCCCCATCCACCTCCCCCTCCAACTCGTCCTCTCCCGCAAGCTCTGGTAGCTCTTCCCCTCCCAGTTCCAGTCATGGCAGCATCACCAGGATCTCTGTCACAGAGTTGGTGACTGGTTTATTCTTCTTGGGTTTTTCTGTGATGAAGTTTTGCGGGATCTGAGTTCAGTTTGCAGGTTTTCAATATTATTTAGATTTTTGGTTCTTGTTCTTTGATTTGCCCAAGTGGCGGGCTTCCCAATGTAATTTCTTGTTTACCAGAGATTTGAAGGACATATTGCTCTCTGGTTATGGCAAAGTTAGAAATGCCATGAAGTTATGGTGGAGGCCTGATAATAAAATGTAACTGCTTATATTAGAAATGGTTCTCAGATCGTTCTTTGATACTGTTACAGTTCCATGGATGGATGCATGCGTTACTGTGAAAAAAGAAACATTAATTTTGCGAATATATTCATAATCTATGCTGGATTGTTCATGCCCATGCAAGTATATTTTTGGATTGAGGCCTGTTAAC

Fln Alignment:

Contig26776___GCYFLPLVLVAFLCLHVADSADTACPKTFSGSTGNNATRNYTQCVTLPQLGATLSWTYSPANGSVDLAFRAKPGSSSGWVAWGINPNAKGMVGTQALIALKQANGTMACNTYNITSKRPPLVPSPISFPATDLSSEFEN-GLITIFAKVVLPSKNRVVNHVWEVGSKAEGLNPSPHAFENSNLESFGSID
E0Z5V0_______________GGYSVVLGFAVVVILAWQASAQT-CLKSF---TDGNAIKSYASCNDLSTLNAALSWTYFPTNGSIDIAFRATPAASAGWVGWGINPTATAMVGTQALIAFKHSNGSMVVDTYNIVAQAPP-SPSTINITVSNKSAVFENTGQITIFATLTLPSNKTAVNHVWQVGSAVNGLVPQAHANNQANLASATTID

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
185		5		94	0.997984
265	97		2		0.975753
491	92		2		0.987114
493		4		95	0.997494
494	95		4		0.997494
766	33	66			0.997452
1047	91		8		0.999766
1075	91		8		0.999807
1123			23	76	1.0
1130		15		76	0.999983
1131		84	15		0.999986
1136		7		61	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain