SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene26752

Length: 1825 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene26752 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Zinc binding dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9SMX2_RICCO	-	-	43%
FL-Next	tr=Zinc binding dehydrogenase, putative; Ricinus communis (Castor bean).	-	-	45%
Blast2go	protein odr-4 homolog	-	-	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	62%

Source	InterPros	Term	Type	e value	Identity
Sma3	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9SMX2

Fln msg:

Fln protein: MVRTVVGDETQLNSMETQLSESGIPVQVGLAIGKLGGPRSNRDSVFALIPTPKNDGVDPASLTSENLETKSARADKRKASKGKPMTDSSSVIIDIDWVGEHAHQVSKMLVGGLHVMGIYVWCGESTFKNSSLVLWQAVKTIARAVPVYENGEADERIVVHISYSPRRWSCRSCSLDGNFTSMSFRPCDLKMTKLLSTLQTFTSIYNFDIRLPLLRDDIRNANDMKKILLKAISLLSKQLKSAKALLDGSLITNDKGSVAEGPHEIDMLVPFADVISVQAGSCEEVVGLVTFSGTIFAQAHTFPREPLLQTVEDLKRDIIASLKSRLDILCDEAEQASISLIPEDNSASEESSLLKPGNPLSCNWSEPCSFVFPRRVLVPWLDGIFICDYLQPTETFQDLDERCKELLSMEIPPDQSAILEPEAPGSTSIGTSFWGMVVGNSASSSPKLGQENSREPGKDAISNLAKLKMALTSLYGAISVSVMIIAMLIALIMMLVDQRTEMQL*

Protein Length: 506

Fln nts: CGTCGTGACCTTGGCTGTTTCTCGGGTCTCATAAACTAGGTACAGCAAAAGAAGTCCTGCGAGACGTTGGTGGTTCAAGCGATC_-_ATGGTGCGAACAGTAGTAGGAGACGAGACCCAGCTAAATTCCATGGAGACACAACTCTCCGAATCTGGCATCCCTGTTCAAGTGGGTCTTGCCATCGGTAAGCTGGGCGGTCCTAGATCCAACCGCGACTCAGTCTTTGCTTTGATTCCGACCCCCAAAAATGATGGAGTGGATCCCGCTTCTTTAACTTCTGAAAATTTGGAGACCAAGTCTGCGAGAGCGGACAAAAGAAAAGCTTCTAAAGGAAAACCAATGACAGATTCATCTTCAGTGATAATTGATATTGATTGGGTGGGAGAACATGCTCACCAGGTCTCAAAAATGCTTGTTGGAGGATTGCATGTGATGGGAATTTATGTATGGTGTGGTGAAAGTACCTTCAAAAACTCCAGTTTGGTGCTTTGGCAGGCAGTGAAGACAATTGCAAGAGCAGTACCGGTCTACGAAAATGGGGAAGCAGATGAGAGAATTGTTGTTCACATCTCTTACAGCCCAAGAAGATGGTCGTGTCGAAGTTGTAGCTTGGATGGGAACTTTACATCAATGTCATTTCGGCCATGTGACCTTAAAATGACAAAGCTTTTATCAACACTTCAGACTTTTACTTCCATCTACAACTTTGATATAAGGTTGCCATTGCTACGGGATGATATCCGAAATGCAAATGACATGAAGAAAATTCTCCTGAAAGCAATTTCATTGCTGTCAAAACAGTTGAAATCTGCCAAGGCTTTGCTTGATGGATCTCTGATCACCAATGATAAGGGATCAGTTGCAGAGGGGCCACACGAGATAGACATGCTTGTGCCATTTGCTGATGTGATATCAGTGCAAGCTGGCAGCTGTGAAGAGGTTGTTGGCTTGGTGACTTTTAGTGGAACAATATTTGCACAAGCACATACCTTTCCAAGAGAACCACTTTTGCAGACCGTTGAGGATTTGAAGCGAGACATCATTGCCAGCCTGAAAAGTAGACTTGACATCCTTTGTGACGAGGCAGAACAGGCATCAATATCTCTTATTCCAGAAGATAACAGTGCATCTGAAGAGAGTTCCCTCTTGAAGCCAGGGAACCCCCTGTCATGTAATTGGAGTGAGCCATGCAGTTTTGTCTTCCCTAGAAGGGTGCTTGTTCCTTGGTTGGATGGCATCTTCATTTGTGACTACTTGCAACCCACAGAAACCTTTCAGGATTTAGATGAGCGGTGCAAGGAATTATTGTCCATGGAAATTCCACCAGATCAATCAGCAATTTTGGAGCCAGAGGCCCCAGGGTCTACTTCAATTGGAACATCATTCTGGGGTATGGTTGTTGGAAACTCTGCATCTTCGTCTCCCAAATTAGGGCAAGAGAATTCCAGAGAACCTGGTAAAGATGCCATCAGTAACTTAGCTAAGTTGAAGATGGCCTTGACAAGTCTATATGGTGCTATATCTGTATCTGTTATGATTATAGCTATGTTGATTGCCCTGATAATGATGCTTGTTGACCAGAGAACTGAAATGCAACTATAA___ATGTAATTATTTTCTCTGAATTGAAATTTTCCATTTTTCTATTGTAATTTCTGTGGCCGGTGCTATCAATTGCCGGTTGATATCATTGAGGTGAAAAATGAAAGCTCTGGATGCATGCTCATTTGCATATTTAATATTTTCAATCTAGAGGATTAATTTATTTTGAAAGTGTATATACAAAAGCATCCACACTTTCCATTCATTTTATTATGAACCAAATTTGAGT

Fln Alignment:

Contig26752___MVRTVVGDETQLNSMETQLSESGIPVQVGLAIGKLGGPRSNRDSVFALIPTPKNDGVDPASLTSENLETXXXXXXXXXXXXXKPMTDSSSVIIDIDWVGEHAHQVSKMLVGGLHVMGIYVWCGESTFKNSSLVLWQAVKTIARAVPVYENGEADERIVVHISYSPRRWSCRSCSLDGNFTSMSFRPCDLKMTKLLSTLQTFTSIYNFDIRLPLLRDDIRNANDMXXXXXXXXXXXXXXXXXXXXXLDGSLITNDKGSVAEGPHEIDMLVPFADVISVQAGSCEEVVGLVTFSGTIFAQAHTFPREPLLQTVEDLKRDIIASLKSRLDILCDEAEQASISLIPEDNSASEESSLLKPGNPLSCN----WSEPCSFVFPRRVLVPWLDGIFICDYLQPTETFQDLDERCKELLSMEIPPDQSAILEPEAPGSTSIGTSFWGMVV-GNSASSS
B9SMX2_______________MVKAVVGDETQLNLVQNRLSQSGLTSQVGLVIGKLSSAL-DRGFVYDLVPTPSNDAGEPACSI---IDTFKDDKKKGSSKSKSQIADSSTLAIDKDWVSEHARQVSRMLLGGMKVIGIYVWVSDASFKNSTITLSQTVKGVAEAAPISAT-DWDERLLIHICYSPMRWTCRNCVLASNITASSIRPCDFKMGRVLSSLRTFRCTYNFELSLPICRENASNSSMLSAILHHGISIHAKVLNSARALIDGNLVVNEESSVTEGLHEVELLLPFMKNTLGEACSNKDVIGVLMFSGSVCSFAYSNSKESISQAVADIKDDIIRSLQSRLDIICDQADE---DLGPMDNDVQDASQGKTPEKPVSRLVLRLLRDTCSLAFPRRVFIPWSGGTFICDYLQPSERLEVLKDHCVELMSMEVPTDTSTILQPEAEAPSLIAKSFWDVAVPGQPASTS

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
688	16		83		0.994512
689	83	16			0.994512
691		83		16	0.994512
709	20			80	0.995493
710		20		80	0.995493
833		50		50	1.0
1674	80		20		0.995493
1675	20			80	0.995493
1676	20		80		0.995493
1677		80		20	0.995493
1680		20	80		0.995493
1758	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain