SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene26683

Length: 1090 nt

Origin of reads: Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene26683 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Probable phenylalanyl-tRNA synthetase alpha chain n=3 Tax=Arabidopsis RepID=SYFA_ARATH	-	-	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	phenylalanyl-trna synthetase alpha chain	-	-	93%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	93%
Blast2go	tRNA aminoacylation	GO:0043039	Biological Process	93%
Blast2go	binding	GO:0005488	Molecular Function	93%

Source	InterPros	Term	Type	Identity
Sma3	Phenylalanyl-tRNA synthetase	IPR002319	-	-
Sma3	Phenylalanyl-tRNA synthetase, class IIc, alpha subunit	IPR004529	-	-
Sma3	Aminoacyl-tRNA synthetase, class II	IPR006195	-	-
Sma3		IPR018157	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABZ4

Fln msg: your sequence is shorter than subject: 221 - 257

Fln protein: FLKVPAYTQTLPEDYLQRVQKVHESGGYGSRGYGYDWKREEAEKNLLRTHTTAVSSRMLYALAQKPFTPKRYFSIDRVFRNEAVDRTHLAEFHQIEGVVCDRGLTLGDLIGVLNDFFSRLGMIKLRFKPAYNPYTEPSMEIFSYHEGLKKWVEVGNSGVFRPEMLLPMGLPEDVSVIAWGLSLERPTMILYGIDNIRDLFGHKVDLNLIKKNPICRLGTQ*

Protein Length: 222

Fln nts: TTTTCTTAAAAGTTCCTGCATATACTCAAACATTACCTGAGGATTATTTACAGAGGGTGCAAAAAGTACATGAATCTGGTGGCTATGGATCTAGAGGATATGGGTACGATTGGAAAAGGGAGGAAGCTGAAAAGAATTTACTGCGCACCCATACAACAGCTGTTTCGTCTAGAATGCTTTATGCACTGGCTCAGAAACCTTTTACCCCTAAAAGATACTTCTCCATTGATAGGGTTTTTCGAAATGAGGCAGTGGATAGAACCCATCTTGCGGAGTTTCACCAAATTGAAGGTGTTGTATGTGACCGGGGCCTTACATTAGGTGATTTGATAGGCGTTCTGAATGACTTCTTCTCACGTCTAGGCATGATCAAATTACGATTCAAACCTGCATACAATCCTTATACAGAGCCCAGTATGGAAATTTTCAGCTACCATGAAGGCTTAAAAAAGTGGGTAGAGGTTGGTAATTCTGGTGTTTTCCGCCCAGAAATGCTGCTCCCAATGGGGTTACCAGAAGATGTTTCTGTTATCGCATGGGGTTTGTCCCTTGAGCGACCTACAATGATATTATATGGCATAGACAATATAAGAGATCTCTTTGGGCACAAGGTGGATCTAAATCTCATCAAGAAAAATCCAATTTGCCGCCTTGGCACTCAGTAG___TATCCGAGTGATATAATGGACATGTTTAATTGTAGAAAATATTCATTTTTGTATCGAGAGGCTTGCTGTAATGGATATCAACAATTGAGCAAAAGTGGTAGAGCTGTGTTTCAATGATGCAGCTAACAGCTTTTCTTGAGATTCTTTCTTTGGATGAGGTTGTCGCATTTGAGGTGGTCCCTCCTTGGTTATGGCAATATTGATATAACCTGAAGAAAATATTGAAAGGAAATTTGTTTCAAAGTTTTATTTATATCGTAGCATCCTAAGAAAATTTGGACCCAAGTTGTATCCAAAGATTTGGCATTGGCCTTAGCTTACCGCATATCTTTCATGACTTAGGCACATTTCTTTAAGGTTGATCGATTTGCTTGTTAAATGTATAAAAAAGTAACCAAGTTTGAATTTATATTTGACAAAAAGTT

Fln Alignment:

Contig26683___FLKVPAYTQTLPEDYLQRVQKVHEXXXXXXXXXXYDWKREEAEKNLLRTHTTAVSSRMLYALAQKPFTPKRYFSIDRVFRNEAVDRTHLAEFHQIEGVVCDRGLTLGDLIGVLNDFFSRLGMIKLRFKPAYNPYTEPSMEIFSYHEGLKKWVEVGNSGVFRPEMLLPMGLPEDVSVIAWGLSLERPTMILYGIDNIRDLFGHKVDLNLIKKNPICRLGTQ
D5ABZ4_______________FLKVPAYTQTLPEDYLQRVQKIHESGGYGSRGYGYDWKREEAEKNLLRTHTTAVSSRMLYALAQKPFTPKRYFSIDRVFRNEAVDRTHLAEFHQIEGLVCDKGLTLGDLIGVLNDFFSRLGMIKLRFKPAYNPYTEPSMEIFSYHEGLKKWVEVGNSGIFRPEMLLPMGLPEDVSVIAWGLSLERPTMILYGIDNIRDLFGHKVDLNLIKKNPICRLGMQ

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
462			75	25	0.996473
820			75	25	0.996473
821		75	25		0.996473
823	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain