SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene26674

Length: 1721 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene26674

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DNA-(Adenosine-N6-)-methyltransferase n=1 Tax=Picea abies RepID=Q3ZDL2_PICAB	-	-	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	s-adenosyl-l-methionine-dependent methyltransferase-like protein	-	-	80%

Source	InterPros	Term	Type	Identity
Sma3	Putative methylase	IPR004557	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Methyltransferase small	IPR007848	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVG1

Fln msg:

Fln protein: MDEAVDIEALVAPVHTSQVSSNDQTRIRSLVSPPTLRRKSADIRLVGRHSEVYEPCDDSFALVDALLADRVHLEEVQPSLCLELGCGTGYVITSLALMLGEGAGIQYFATDISSAAIEVTKKTLEAHGVHAEVILTDLASGLDKRLAGTVDVLVVNPPYVPTSEEEVGGNGIAAAWAGGEHGRTVIDRILAIVDNLLSSKGWFYLVTLTANKPSEICLIMKQKGFASRIIVQRSTEEESLHVLKFWRDPLEITTDIGTSQPHLSSARRLSRLAFWKNS*

Protein Length: 280

Fln nts: TCGTGACCTTGGCTGTCACTCATTACATTTCCGAACATTCAGAAAGTTGAGGTTCCATATTACGCCTGCTTGGGGCCTCTTGGTCTTTAAATATACCTATGATCCATAGTAATTGCTAATCCCTCTGTCGGGATTTGGATTTAGTGACGGAGCAATACTCTTGACTCTCGTTCTCTGTATGGCTTGAGCGTCTGATTTTTCAATAACCTTTCAAGGGAATTGAGTGATAAATTCCTTTAAACAAATAAGGACCCTAACTTCAAAACAAGAAGGGCTTCGAAGCCAACGCTGATATCATCTCTCCAGTTGTTTCGAATTCGGATGCTCTGCGTAGGATTGAACCTTGGACCTGCTTAATACAGTAACTGGTCCATTTGACTTCATTGAACGTTGGACCTGCTCGATACATTAACTGTTCCATTTGACTTCTATATGAGACTTGGTCTTTTTGGAAGATAGTGATTGGC_-_ATGGATGAAGCAGTAGATATAGAAGCTCTTGTTGCTCCTGTGCATACATCCCAAGTTAGCAGCAACGACCAGACCAGGATCCGAAGTTTGGTTTCCCCCCCTACCTTACGTAGGAAGAGTGCAGACATTCGTCTTGTTGGGCGCCACTCAGAAGTTTATGAGCCCTGTGATGATTCATTTGCACTTGTAGATGCCCTGCTCGCTGATCGGGTTCATCTTGAGGAAGTTCAACCAAGCTTGTGTTTAGAACTCGGATGTGGGACTGGATATGTGATAACATCATTGGCACTTATGCTTGGGGAAGGCGCTGGGATCCAATACTTTGCTACTGACATTAGCTCTGCAGCTATTGAGGTTACAAAGAAGACTTTAGAAGCTCATGGTGTGCATGCAGAAGTAATTTTGACTGATCTTGCATCTGGTCTGGACAAACGTCTAGCTGGAACAGTGGATGTCCTTGTAGTCAACCCCCCTTATGTACCTACTTCTGAGGAGGAGGTTGGTGGCAATGGAATTGCTGCTGCATGGGCTGGTGGAGAGCATGGTCGTACCGTGATTGACAGGATACTAGCAATTGTAGACAACCTCTTATCCAGCAAGGGTTGGTTTTACCTTGTCACATTAACTGCAAATAAACCTTCTGAAATTTGTTTGATCATGAAACAGAAAGGATTTGCATCTCGAATTATAGTCCAGAGATCTACAGAGGAAGAAAGCCTCCACGTGCTTAAATTCTGGCGTGATCCTCTGGAGATCACAACTGATATTGGAACAAGCCAGCCCCATCTATCTTCAGCCAGGCGGCTTTCTCGCCTAGCATTTTGGAAAAACAGCTGA___AGTATATGATTTCAACAGTGATGTCATTCTGTTCAGACAGTTTGACTTTCATGGGTTTTCAGCGTTTTGGGTTTTTTTGTAACCCAATGGAGCTCTCTTGAGTGAAGTATATCTTACATAGCATCACTAGAGAGTCATATTTAATTCATGATTGTGTATTCTGTTGTCCAAAGATAGCATGTCTTAGTTTCCAATGTCCATGATCACTCCAACATTGTTTTGGTTCTAACCTTATTCACGTCTGGGGATCACGAAATACTGTCAAATTTAACCTATTCTGTGAACTCGATATACTCAAAATCCATAGCATGTTAACAGATCTTGTCTAGCATGTTAGTTAGTACTAACGATCAGAGATAATCAAGTGCCATGGTTTGCACAAGGGTCAGAGGATGGATATGAATCAGGGTTTGCTTA

Fln Alignment:

Contig26674___MDEAVDIEALVAPVHTSQVSSNDQTRIRSLVSPPTLRRKSADIRLVGRHSEVYEPCDDSFALVDALLADRVHLEEVQPSLCLELGCGTGYVITSLALMLGEGAGIQYFATDISSAAIEVTKKTLEAHGVHAEVILTDLASGLDKRLAGTVDVLVVNPPYVPTSEEEVXXXXXXXXXXXXEHGRTVIDRILAIVDNLLSSKGWFYLVTLTANKPSEICLIMKQKGFASRIIVQRSTEEESLHVLKFWRDPLEITTDIGTSQPHLSSARRLSRLAFWKNS
A9NVG1_______________MDEAVDVEALVAPVHTPQVSSN-HTKIQSLVSPSTLRRKSADIRLVGCHSEVYEPCDDSFALVDALLADRVHLEEVQPSLCLELGCGSGYVITSLALMLGEGTGIQYLATDINSAAIEVTKKTLEAHGVHAEVILTDLVSGLDKRLAGTVDVLVVNPPYVPTSEEEVGGDGIAAAWAGGEHGRTVIDRILAIVDNLLSSKGWFYLVTLTANKPSEICLIMKQKGFASRIIVQRSTEEESLHVLKFWRDPLEITTDIGTSQPHLSSTWRFSRLAFWKNS

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
1055	33	66			1.0
1057		33	66		1.0
1058			33	66	1.0
1059			33	66	1.0
1156			20	80	0.995493
1157	80		20		0.995493
1402		56		44	1.0
1479		29	70		1.0
1511		34		60	1.0
1518	43		56		1.0
1528			36	63	1.0
1545		36		63	1.0
1558		35		64	1.0
1576	37		62		1.0
1623	38		61		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain