SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene26646

Length: 2622 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene26646
CGTGACCTTGGCTGTCACTCAGTGTTATATTACAGCTCTGTGACATTTTGAAGTGGAAGAAAATGGAGTTGGGAGCATAGATGGCCTCAAAGGAACCAAAGGATGTGCAGATGGAGGTGATGGTTCATGGAGTGGAGAATGAAGAGGGCGATGTTTTAAAAGGAAACAAGCTGCATGGTAACTCTCAGTGCAGCAAGTTCAAGCGGGTTGACTCCTTAGATTTGGAGTCGAGTACAGTTTCTGGAATGGCTACTCATGGCTCGAATCTGGTTACAGTGGCTTCCATTCTCCAGTTGGCCTTTCAGAGTATTGGAGTGGTTTATGGAGATATAGGAACTTCTCCCCTTTATGTGTTTGCTTCCACTTTTACAGATGGTATCCGTCATCCAGATGATGTTCTTGGTGCTCTGTCTCTCATAATATACTCGCTCACTCTTTTGCCACTGCTCAAATACGTTTTCATTGTACTGTGGGCTAATGATAACGGAGATGGTGGGACGTTTGCACTTTATTCCTTGATATGCCGTCATGCAAAAGTGAGCGTGGTTCCCAATCAACAAGCAGAGGATAGAGAGCTTTCATCATATAAGCTTGCAGTTCCCAGCAGGGAGCTCAAAAGAGCTTTGAAGATAAAAGAAGCTTTAGAAAAAAGTAATGCAGCTAAAACAATTTTGCTCATACTGGCCCTTCTTGGTACCTCCATGGTTATTGGAGATGGTGTGCTCACTCCTTGTATCTCAGTTTTATCAGCAGTTCAAGGGATACGGCAGGTTGACAAGTCAATCACCCAGGGGACAGTAGCTATGATATCAGTGGTGATAATAGTTATGCTCTTCTCTGTCCAGAGATTTGGAACCAGAAAAGTTGGTTACTCATTTGCTCCAGCGATCTTGATATGGTACTCCTCTATTGCCTTCATTGGCATCTACAACATCGTCAAATATGATACAACTGTGTTCCGAGCTTTCTATCCCAAATACATCTTTGAATACTTCAGAAGAGATTCACAGAGGGCTTGGATTTCACTTGGAGGAATAGTTCTCTGTGTAACAGGAACTGAAGCTATGTTCGCAGATCTAGGTCATTTTTCTGTTCGTTCAATTCAGATTGCCTTTACTGGAATAGTCTATCCTGCTTTAATCTGCGCATATGTGGGCCAAGCTGCATATCTCAAGAAGTTCCCTGAAAATGTGTCAGATACATTTTACAAATCTACTCCAAGAGCTATATATTGGCCAATGTTTGCAATTGCAATTGTTGCTTCTATTATAGCAAGCCAAGCCATGATCTCTGCAACTTTTGCTATCATAAAGCAGTCCATGTCCCTCGGATGCTTTCCACGCGTTACGGTGGTGCACACTTCATCAAAGCATGAAGGCCAAGTCTATATTCCAGAAATCAACTACATTCTCATGTTGGCATGCGTCATTGTCACCATTTCTTTCCAAGATACTACAAAGATCGGCAATGCCTATGGCATAGCTGTGGTTGGGGTTATGATTGTCACTTCATCCTTCCTCACACTGGTAATGCTTATGATATGGCAGACTCATTTATTGCTGATCGTTATCTTCGTCACTGTATTTGGAGCCATCGAATTCACATACTTCTCGGCAGTGCTGTACAAGTTTCCCCAAGGTGGATACCTTCCAACAGCTTTTGCAGCATTATTGTTATTTGTAATGTATGTGTGGCATTATGTGCATGTAAAGAGATACGCCTATGAAGTAGAACACAAGGTGTCAACAGAATACATGTTAAGCCTGGGTTCAAGTCTGGATGTGACCAGAGTTCCGGGGATTGGGCTTCTATACACAGAACTAGCACAAGGAGTTCCAGCAATATTTGAACATTTCATGAGAAACCTTCCTGCCAGGCATTCTGTGCTTGTATTCGTCTGTGTGAAGTACCTCCCTGTTAATACAATTCCAGCTGAAGAACGATTTGTATTTCGCAGAATTGGTCCAAAAGAACACAAAATCTATAGATGTGTGGCTAGGTATGGTTATCGGGATACTAGGACTGGGAATGTTGAGTTTGAGAACCAGTTACTGGAATCCTTGAGAGAATTTATACAGTACGATTACCTATGCAGAAATGATATTATTAAGAAATCTCAGCATGAAGGAAAGAGTTCCAACTCTGGAGAAAGTACAGTCAATATTGACGCTGCTTCTGAAACTGAAGACATGAAGGCGTGCAGCATGGTGAGCGTAAAGGAGGAGCTGGAATTCTTAGAAAATGCAAAGGAATCGGGTGTGGTATATTTGCTGGGAGACAGTGAAGTTATTGCAAACAAAGATTCATCATTGTTCAAGAGATTTATAGTGAACTTTGCTTATAACATTTTGCGCAGGAACTGTAGAAAGGGGCAAGCTGCTTTAGAGATTCCACACAAAAATCTTTTGCAAGTCGGAATGACCTATTATATCTAAACTATATCGACTATGATATTTTTGTATATGTAGGTTTAATTCTTTTAACCCCGTCTGTCTGTAACGTGGCATTCGCTAAATTGTCAATCTGAGTAATGTATATTAATTGTGTTACCTCATATTTAAGGAGGTCCACAAATTTCTTCGAAATTCAAACTTCAAACTCTCAGGTTTCTTTCATAAAAAC

Ace file of the UniGene sp_v2.0_unigene26646

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	high-affinity K+ transporter [Capsicum annuum]	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	37%
Blast2go	protein	-	-	74%

Source	InterPros	Term	Type	Identity
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	K+ potassium transporter	IPR003855	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3		IPR018519	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8F8

Fln msg: your sequence is longer than subject: 785 - 250

Fln protein: MASKEPKDVQMEVMVHGVENEEGDVLKGNKLHGNSQCSKFKRVDSLDLESSTVSGMATHGSNLVTVASILQLAFQSIGVVYGDIGTSPLYVFASTFTDGIRHPDDVLGALSLIIYSLTLLPLLKYVFIVLWANDNGDGGTFALYSLICRHAKVSVVPNQQAEDRELSSYKLAVPSRELKRALKIKEALEKSNAAKTILLILALLGTSMVIGDGVLTPCISVLSAVQGIRQVDKSITQGTVAMISVVIIVMLFSVQRFGTRKVGYSFAPAILIWYSSIAFIGIYNIVKYDTTVFRAFYPKYIFEYFRRDSQRAWISLGGIVLCVTGTEAMFADLGHFSVRSIQIAFTGIVYPALICAYVGQAAYLKKFPENVSDTFYKSTPRAIYWPMFAIAIVASIIASQAMISATFAIIKQSMSLGCFPRVTVVHTSSKHEGQVYIPEINYILMLACVIVTISFQDTTKIGNAYGIAVVGVMIVTSSFLTLVMLMIWQTHLLLIVIFVTVFGAIEFTYFSAVLYKFPQGGYLPTAFAALLLFVMYVWHYVHVKRYAYEVEHKVSTEYMLSLGSSLDVTRVPGIGLLYTELAQGVPAIFEHFMRNLPARHSVLVFVCVKYLPVNTIPAEERFVFRRIGPKEHKIYRCVARYGYRDTRTGNVEFENQLLESLREFIQYDYLCRNDIIKKSQHEGKSSNSGESTVNIDAASETEDMKACSMVSVKEELEFLENAKESGVVYLLGDSEVIANKDSSLFKRFIVNFAYNILRRNCRKGQAALEIPHKNLLQVGMTYYI*

Protein Length: 786

Fln nts: CGTGACCTTGGCTGTCACTCAGTGTTATATTACAGCTCTGTGACATTTTGAAGTGGAAGAAAATGGAGTTGGGAGCATAG_-_ATGGCCTCAAAGGAACCAAAGGATGTGCAGATGGAGGTGATGGTTCATGGAGTGGAGAATGAAGAGGGCGATGTTTTAAAAGGAAACAAGCTGCATGGTAACTCTCAGTGCAGCAAGTTCAAGCGGGTTGACTCCTTAGATTTGGAGTCGAGTACAGTTTCTGGAATGGCTACTCATGGCTCGAATCTGGTTACAGTGGCTTCCATTCTCCAGTTGGCCTTTCAGAGTATTGGAGTGGTTTATGGAGATATAGGAACTTCTCCCCTTTATGTGTTTGCTTCCACTTTTACAGATGGTATCCGTCATCCAGATGATGTTCTTGGTGCTCTGTCTCTCATAATATACTCGCTCACTCTTTTGCCACTGCTCAAATACGTTTTCATTGTACTGTGGGCTAATGATAACGGAGATGGTGGGACGTTTGCACTTTATTCCTTGATATGCCGTCATGCAAAAGTGAGCGTGGTTCCCAATCAACAAGCAGAGGATAGAGAGCTTTCATCATATAAGCTTGCAGTTCCCAGCAGGGAGCTCAAAAGAGCTTTGAAGATAAAAGAAGCTTTAGAAAAAAGTAATGCAGCTAAAACAATTTTGCTCATACTGGCCCTTCTTGGTACCTCCATGGTTATTGGAGATGGTGTGCTCACTCCTTGTATCTCAGTTTTATCAGCAGTTCAAGGGATACGGCAGGTTGACAAGTCAATCACCCAGGGGACAGTAGCTATGATATCAGTGGTGATAATAGTTATGCTCTTCTCTGTCCAGAGATTTGGAACCAGAAAAGTTGGTTACTCATTTGCTCCAGCGATCTTGATATGGTACTCCTCTATTGCCTTCATTGGCATCTACAACATCGTCAAATATGATACAACTGTGTTCCGAGCTTTCTATCCCAAATACATCTTTGAATACTTCAGAAGAGATTCACAGAGGGCTTGGATTTCACTTGGAGGAATAGTTCTCTGTGTAACAGGAACTGAAGCTATGTTCGCAGATCTAGGTCATTTTTCTGTTCGTTCAATTCAGATTGCCTTTACTGGAATAGTCTATCCTGCTTTAATCTGCGCATATGTGGGCCAAGCTGCATATCTCAAGAAGTTCCCTGAAAATGTGTCAGATACATTTTACAAATCTACTCCAAGAGCTATATATTGGCCAATGTTTGCAATTGCAATTGTTGCTTCTATTATAGCAAGCCAAGCCATGATCTCTGCAACTTTTGCTATCATAAAGCAGTCCATGTCCCTCGGATGCTTTCCACGCGTTACGGTGGTGCACACTTCATCAAAGCATGAAGGCCAAGTCTATATTCCAGAAATCAACTACATTCTCATGTTGGCATGCGTCATTGTCACCATTTCTTTCCAAGATACTACAAAGATCGGCAATGCCTATGGCATAGCTGTGGTTGGGGTTATGATTGTCACTTCATCCTTCCTCACACTGGTAATGCTTATGATATGGCAGACTCATTTATTGCTGATCGTTATCTTCGTCACTGTATTTGGAGCCATCGAATTCACATACTTCTCGGCAGTGCTGTACAAGTTTCCCCAAGGTGGATACCTTCCAACAGCTTTTGCAGCATTATTGTTATTTGTAATGTATGTGTGGCATTATGTGCATGTAAAGAGATACGCCTATGAAGTAGAACACAAGGTGTCAACAGAATACATGTTAAGCCTGGGTTCAAGTCTGGATGTGACCAGAGTTCCGGGGATTGGGCTTCTATACACAGAACTAGCACAAGGAGTTCCAGCAATATTTGAACATTTCATGAGAAACCTTCCTGCCAGGCATTCTGTGCTTGTATTCGTCTGTGTGAAGTACCTCCCTGTTAATACAATTCCAGCTGAAGAACGATTTGTATTTCGCAGAATTGGTCCAAAAGAACACAAAATCTATAGATGTGTGGCTAGGTATGGTTATCGGGATACTAGGACTGGGAATGTTGAGTTTGAGAACCAGTTACTGGAATCCTTGAGAGAATTTATACAGTACGATTACCTATGCAGAAATGATATTATTAAGAAATCTCAGCATGAAGGAAAGAGTTCCAACTCTGGAGAAAGTACAGTCAATATTGACGCTGCTTCTGAAACTGAAGACATGAAGGCGTGCAGCATGGTGAGCGTAAAGGAGGAGCTGGAATTCTTAGAAAATGCAAAGGAATCGGGTGTGGTATATTTGCTGGGAGACAGTGAAGTTATTGCAAACAAAGATTCATCATTGTTCAAGAGATTTATAGTGAACTTTGCTTATAACATTTTGCGCAGGAACTGTAGAAAGGGGCAAGCTGCTTTAGAGATTCCACACAAAAATCTTTTGCAAGTCGGAATGACCTATTATATCTAA___ACTATATCGACTATGATATTTTTGTATATGTAGGTTTAATTCTTTTAACCCCGTCTGTCTGTAACGTGGCATTCGCTAAATTGTCAATCTGAGTAATGTATATTAATTGTGTTACCTCATATTTAAGGAGGTCCACAAATTTCTTCGAAATTCAAACTTCAAACTCTCAGGTTTCTTTCATAAAAAC

Fln Alignment:

Contig26646___LYTELAQGVPAIFEHFMRNLPARHSVLVFVCVKYLPVNTIPAEERFVFRRIGPKEHKIYRCVARYGYRDTRTGNVEFENQLLESLREFIQYD--YLCRNDIIKKSQHE---GKSSNSGESTVNIDAASETEDMKACSMV-------------------------------------SVKEELEFLENAKESGVVYLLGDSEVIANKDSSLFKRFIVNFAYNILRRNCRKGQAALEIPHKNLLQVGMTYYI
D5A8F8_______________MYTELVTGIPANFTHFVTNLPAFHQVLIFICIKSVPVPYVPPEERFLIGRVGPKEYRLYRCIVRYGYRDVHGDTDHFEDQLILNLGEFIRSEAKHSCSSDSYSADGRMAVIGTPVHGMESILSYETAEESIQSVNLSYLGSQTIQSIQDLIETDSPHLARRKKVRFLLPSSPDIDPDVKDELQELFQAREAGIAFILGHSYVKAKNDSSFLKKLAINAGYNFLRKNCRGPSVALRIPHISLLEVGMVYLV

SNPs (tot: 72)

Position	A %	C %	G %	T %	Probability
396			16	83	0.994512
593	18			81	0.999994
616	62		37		1.0
710	80	20			0.995493
711			20	80	0.995493
714	20		80		0.995493
715	80	20			0.995493
716		20	80		0.995493
717	80			20	0.995493
724	20		80		0.995493
746		33		66	1.0
763		16	83		0.994512
811	60			40	1.0
812			40	60	1.0
819		33		66	1.0
883			20	80	0.995493
884		80		20	0.995493
888		80		20	0.995493
891		20		80	0.995493
897			25	75	0.996473
898	75	25			0.996473
901			75	25	0.996473
902		25		75	0.996473
1054	66		33		0.997452
1140		25		75	0.996473
1242	60		40		1.0
1268		20		80	0.995493
1333			83	16	0.994512
1373	27		63		1.0
1388		63	36		1.0
1419		37		62	1.0
1430		57		42	1.0
1431	57			42	1.0
1460	57	42			1.0
1475	16	83			0.994512
1487		50		50	1.0
1508		60	40		1.0
1516		40	60		1.0
1556	66	33			1.0
1558		20		80	0.995493
1567	80		20		0.995493
1573	80		20		0.995493
1596	25	75			0.996473
1607		75		25	0.996473
1626		25	75		0.996473
1657	66			33	0.997452
1662	14			85	0.993533
1672			16	83	0.994512
1674	83		16		0.994512
1677	16		83		0.994512
1680	83		16		0.994512
1707		16	83		0.994512
1725		83		16	0.994512
1751		83	16		0.994512
1776	80		20		0.995493
1902		75		25	0.996473
1933		66		33	0.997452
1968		33		66	0.997452
2007		40		60	1.0
2028			22	77	0.999999
2052	25		75		1.0
2060	83		16		0.994512
2084	57			42	1.0
2097		57	42		1.0
2310	80			20	0.995493
2388	66		33		0.997452
2515	12	87			0.992554
2534	87		12		0.992554
2545	87		12		0.992554
2551			12	87	0.992554
2602	75			25	0.996473
2609			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain