SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: inia v1.0

UniGene Name: inia_v1.0_unigene5530

Length: 371 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>inia_v1.0_unigene5530
GAAACATGTACTGGTTATGGAGAAGGCAATGCTCAACAAACTGAAATTCCATCTCACAGTCCCAACTCCATATGTATTCCTTGTCCGGTTCCTCAAAGCTGCTGCCTCTGATGAAGAGATGGAAAATTTGGTATTCTTCTTGATGGAACTGAGCTTGATGCAATATGTGATGATAAAGTTCCCCCCATCAATGCTCGCTGCTGCTGCAGTCTACACCGCTCAAATCACTTTGAAAAAGACACCTGTCTGGAACGATGTACTTAAACGCCATACAGGCTACTCTGAAACAGACCTCAAGGAGTGTACAAGACTGATGGTGGCATTCCATCAGAGTTCAGAAGAAGGCAGATTGAATGTAGTTTTTAAAAAGT

Ace file of the UniGene inia_v1.0_unigene5530 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6837	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	cyclin B1 [Allium cepa]	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	cyclin b1	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	cell cycle	GO:0007049	Biological Process	76%
Blast2go	cell division	GO:0051301	Biological Process	76%
Blast2go	nucleus	GO:0005634	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	Cyclin, C-terminal	IPR004367	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3		IPR006670	-	-
Sma3	Cyclin, N-terminal	IPR006671	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Cyclin-like	IPR013763	-	-
Sma3	Cyclin A/B/D/E	IPR014400	-	-
Sma3	Cyclin A, G2/mitotic-specific	IPR015453	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AC16

Fln msg: Distance to subject end: 19 aas, your sequence is shorter than subject: 123 - 465

Fln protein: KHVLVMEKAMLNKLKFHLTVPTPYVFLVRFLKAAASDEEMENLVFFLMELSLMQYVMIKFPPSMLAAAAVYTAQITLKKTPVWNDVLKRHTGYSETDLKECTRLMVAFHQSSEEGRLNVVFKK

Protein Length: 124

Fln nts: GAAACATGTACTGGTTATGGAGAAGGCAATGCTCAACAAACTGAAATTCCATCTCACAGTCCCAACTCCATATGTATTCCTTGTCCGGTTCCTCAAAGCTGCTGCCTCTGATGAAGAGATGGAAAATTTGGTATTCTTCTTGATGGAACTGAGCTTGATGCAATATGTGATGATAAAGTTCCCCCCATCAATGCTCGCTGCTGCTGCAGTCTACACCGCTCAAATCACTTTGAAAAAGACACCTGTCTGGAACGATGTACTTAAACGCCATACAGGCTACTCTGAAACAGACCTCAAGGAGTGTACAAGACTGATGGTGGCATTCCATCAGAGTTCAGAAGAAGGCAGATTGAATGTAGTTTTTAAAAAGT

Fln Alignment:

mc_mira_c5149___KHVLVMEKAMLNKLKFHLTVPTPYVFLVRFLKAAASDEEMENLVFFLMELSLMQYVMIKFPPSMLAAAAVYTAQITLKKTPVWNDVLKRHTGYSETDLKECTRLMVAFHQSSEEGRLNVVFKK
D5AC16________________KHVLVMEKEMLNKLKFHLTVPTPYVFLVRFLKAAGSDEEMANLVFFLTELSLMQYVMIKFPPSMLAAAAVYTARCTLQKMPVWSHVLKAHSGYSETDLKECVKLMVAFHQSSEESKLNTVIKK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
220		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain