SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: inia v1.0

UniGene Name: inia_v1.0_unigene5039

Length: 482 nt

UniGene Fasta

>inia_v1.0_unigene5039
GGCAACACCAGTAGATGCGGTTAAAGGTATCACGTAGTGGTCGCTACTCCGCCAATGCAATTGGAGTGGCTGCATCTCTGTCTGTTGTTTCTGTTTTCCACCGTAGTAGAAACAAATGGCTTTGCCACTTTCAGATTTATTGACAGCAGCAAGTTCTATACTACACTCTAAATATGAACATTTGAGGGTAGTTGATTGCAATAGCGGCATAGACATACGGGGAAGCAACAAAATGCGTTTCAATTTTGCAAGTCAGGAAATTTCCGCACTGGCATTTTCCTGTTCAGGGGCTGCGAGAAAAACATTCAGACATACTCTCGGTATCTTGAGAGCGCATATGGAAAACAGAGAACAAAGTTACAATTCGAAACCGAAAAGCCTAAAGATGGTTTTATCAGGAGATGGGCAGTCAGAGCAGAGGGATGAATCCACAAACAGGAACCATGTTCCTTCAAATTCATTGTCAAACGAAGAGGAGAAGA

Ace file of the UniGene inia_v1.0_unigene5039

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14436	8/8

Source	Descriptions	Term	Type	Identity
AutoFact	Putative serine acetyltransferase [Oryza sativa Japonica Group] gb\|EAY88416.1\| hypothetical protein OsI_09878 [Oryza sativa Indica Group]	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	serine acetyltransferase	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:2.3.1.3-	-	0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	cysteine biosynthetic process from serine	GO:0006535	Biological Process	87%
Blast2go	sulfate assimilation	GO:0000103	Biological Process	87%
Blast2go	serine O-acetyltransferase activity	GO:0009001	Molecular Function	87%
Blast2go	cytosol	GO:0005829	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Bacterial transferase hexapeptide repeat	IPR001451	-	-
Sma3	Hexapeptide transferase, conserved site	IPR018357	-	-
Sma3	Serine acetyltransferase, N-terminal	IPR010493	-	-
Sma3	Serine O-acetyltransferase	IPR005881	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXF4

Fln msg: Distance to subject end: 376 aas, your sequence is shorter than subject: 122 - 498

Fln protein: MALPLSDLLTAASSILHSKYEHLRVVDCNSGIDIRGSNKMRFNFASQEISALAFSCSGAARKTFRHTLGILRAHMENREQSYNSKPKSLKMVLSGDGQSEQRDESTNRNHVPSNSLSNEEEK

Protein Length: 123

Fln nts: GGCAACACCAGTAGATGCGGTTAAAGGTATCACGTAGTGGTCGCTACTCCGCCAATGCAATTGGAGTGGCTGCATCTCTGTCTGTTGTTTCTGTTTTCCACCGTAGTAGAAACAA_-_ATGGCTTTGCCACTTTCAGATTTATTGACAGCAGCAAGTTCTATACTACACTCTAAATATGAACATTTGAGGGTAGTTGATTGCAATAGCGGCATAGACATACGGGGAAGCAACAAAATGCGTTTCAATTTTGCAAGTCAGGAAATTTCCGCACTGGCATTTTCCTGTTCAGGGGCTGCGAGAAAAACATTCAGACATACTCTCGGTATCTTGAGAGCGCATATGGAAAACAGAGAACAAAGTTACAATTCGAAACCGAAAAGCCTAAAGATGGTTTTATCAGGAGATGGGCAGTCAGAGCAGAGGGATGAATCCACAAACAGGAACCATGTTCCTTCAAATTCATTGTCAAACGAAGAGGAGAAGA

Fln Alignment:

mc_mira_c4259___MALPLSDLLTAASSILHSKYEHLRVVDCNSGIDIRGSNKMRFNFASQEISALAFSCSGAARKTFRHTLGILRAHMENREQSYNSKPKSLKMVLSGDGQSEQRDESTNRNHVPSNSLSNEEEK
A9NXF4________________MALSLSDLLIAASDILHSKYEHTRVVDCNSSINIRRSNKMRFNFGSQGISALEFPCSGTAGKTFRHTNDILRAHMENREESYSSRPKSLEMFSSGDGQSEQRGESTNRDHVLSNSLSVKEEK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
217		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain