SustainPineDB

Assembly Name: inia v1.0

UniGene Name: inia_v1.0_unigene4835

Length: 1445 nt

UniGene Fasta

Ace file of the UniGene inia_v1.0_unigene4835

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1622	27/27

Source	Descriptions	Term	Type	Identity
AutoFact	Probable aldehyde dehydrogenase n=1 Tax=Linum usitatissimum RepID=ALDH_LINUS	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	24%
Blast2go	delta-1-pyrroline-5-carboxylate dehydrogenase mitochondrial-like	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Aldehyde dehydrogenase (NAD(+)).	EC:1.2.1.3	-	0.0	85%

Source	KEGGs	Term	Identity
Blast2go	Glycolysis / Gluconeogenesis	00010	85%
Blast2go	Pentose and glucuronate interconversions	00040	85%
Blast2go	Ascorbate and aldarate metabolism	00053	85%
Blast2go	Fatty acid metabolism	00071	85%
Blast2go	Valine, leucine and isoleucine degradation	00280	85%
Blast2go	Lysine degradation	00310	85%
Blast2go	Arginine and proline metabolism	00330	85%
Blast2go	Histidine metabolism	00340	85%
Blast2go	Tryptophan metabolism	00380	85%
Blast2go	beta-Alanine metabolism	00410	85%
Blast2go	Glycerolipid metabolism	00561	85%
Blast2go	Pyruvate metabolism	00620	85%
Blast2go	Chloroalkane and chloroalkene degradation	00625	85%
Blast2go	Propanoate metabolism	00640	85%
Blast2go	Limonene and pinene degradation	00903	85%
Blast2go	Metabolic pathways	01100	85%
Blast2go	Biosynthesis of secondary metabolites	01110	85%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	85%
Blast2go	aldehyde dehydrogenase (NAD) activity	GO:0004029	Molecular Function	85%
Blast2go	mitochondrion	GO:0005739	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Aldehyde dehydrogenase, N-terminal	IPR016162	-	-
Sma3	Aldehyde dehydrogenase domain	IPR015590	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUF6

Fln msg: your sequence is shorter than subject: 449 - 544

Fln protein: PLKNPERYVMYGDISARAAAALKQPEVSHFFAKLIQRVSPKSFAQALGEVNVTQTFLENFSGDQVRFLARSFAVPGNHHGQQSSGFRWPYGPVAIITPFNFPLEIPLLQLMGALYMGNKPLLKVDSKVSIVMEQMLRLLHECGMPLGDVDFVNCDGSTMNRLLLEGDPRMTLFTGSSRVAEKLAVDLKGRVKLEDAGFDWKILGPDVQEVDYVAWVCDQDAYACSGQKCSAQSILFVHENWNSANLVPKLKALAERRKLEDLTVGPVLTVTTEHMLAHVKRILEIPGAKLLFGGEPLENHSIPEIYGAMKPTAIFVPLDELLKDTNFDVVTTEIFGPFQILTNYRKDQLHMVLDACERMHAHLTAAVVSNDIAFLQDVLGRSVNGTTYAGIRARTTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWSCHREIIYDVGPVPDEWTLPACT*

Protein Length: 450

Fln nts: ACCCATTAAAAAATCCTGAGAGATATGTTATGTACGGAGATATTTCTGCAAGGGCTGCTGCTGCATTGAAACAACCTGAGGTGTCACACTTTTTTGCAAAATTGATACAACGTGTGTCCCCCAAGAGTTTTGCTCAGGCTCTCGGTGAGGTCAATGTTACACAAACGTTTTTGGAGAACTTTTCTGGTGACCAGGTCCGATTTTTGGCTCGATCATTTGCAGTACCGGGAAATCATCATGGACAGCAAAGCAGTGGCTTTCGATGGCCCTATGGTCCTGTGGCAATCATAACACCATTCAATTTTCCGTTGGAGATACCTCTCCTCCAGCTTATGGGTGCCCTCTACATGGGAAACAAGCCACTTTTAAAAGTTGATAGCAAGGTTAGCATAGTAATGGAGCAAATGTTAAGGCTTCTTCATGAGTGTGGAATGCCTCTTGGAGATGTAGATTTTGTCAACTGTGATGGTAGCACCATGAATAGGCTTTTGCTAGAGGGAGATCCACGCATGACTCTTTTCACCGGAAGTTCAAGGGTTGCTGAGAAACTTGCTGTTGATCTGAAAGGGCGTGTGAAATTAGAAGATGCAGGATTTGATTGGAAAATTCTTGGCCCTGATGTTCAAGAGGTTGATTATGTTGCATGGGTTTGCGACCAGGATGCTTATGCATGTAGTGGGCAAAAATGTTCTGCGCAATCAATTCTATTCGTTCATGAGAATTGGAACTCTGCCAATCTTGTACCCAAGTTGAAAGCTCTTGCTGAGAGAAGGAAATTAGAAGATTTAACAGTCGGCCCTGTTCTCACTGTGACAACGGAACACATGCTAGCACATGTGAAAAGGATACTTGAGATTCCAGGAGCAAAATTGCTGTTTGGTGGAGAGCCTTTGGAGAACCATAGTATCCCAGAAATCTATGGGGCCATGAAACCGACAGCCATTTTTGTACCTCTTGATGAATTATTGAAAGACACAAATTTTGATGTGGTGACAACTGAAATTTTTGGCCCCTTCCAGATTTTAACCAATTACAGGAAAGATCAACTTCACATGGTGCTGGATGCATGTGAACGAATGCATGCCCATTTAACAGCAGCAGTTGTTTCAAATGATATTGCATTTTTACAGGATGTTCTAGGAAGATCTGTAAATGGGACAACATATGCTGGTATCCGTGCACGAACAACAGGAGCTCCTCAGAATCACTGGTTTGGGCCAGCTGGAGATCCAAGAGGGGCAGGGATTGGCACACCAGAGGCAATCAAGTTGGTTTGGTCATGCCATAGAGAGATTATTTATGACGTTGGCCCTGTGCCAGATGAGTGGACTCTTCCAGCTTGCACATGA___TGAATTTTGCTCAATTGCAGATGATTCTTCAGGTTGTGATGTTAATTTATATGTGGACGGATGCTTTGAATGTCATGCATACCAGTCTTAACTCTA

Fln Alignment:

mc_mira_c3503___KSFAQA-LGEVNVTQTFLENFSGDQVRFLARSFAVPGNHHGQQSSGFRWPYGPVAIITPFNFPLEIPLLQLMGALYMGNKPLLKVDSKVSIVMEQMLRLLHECGMPLGDVDFVNCDGSTMNRLLLEG-DPRMTLFTGSSRVAEKLAVDLKGRVKLEDAGFDWKILGPDV----QEVDYVAWVCDQDAYACSGQKCSAQSILFVHENWNSANLVPKLKALAERRKLED-----LTVGPVLTVTTEHMLAHVKRILEIPGAKLLFGGEPLENHSIPEIYGAMKPTAIFVPLDELLKDTNFDVVTTEIFGPFQILTNYRKDQLHMVLDACERMHAHLTAAVVSNDI
A9NUF6________________KPYEQASLVEVPMAVRLFRYYAGWADKIHGLTVPADGPYHVQT---LHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNSIVLKSAEQTPLTALYAAKLFHEAGLPPGVLNIVSGFGPTAGAAIARHMDIDKVAFTGSTETG-KAVLELASKSNLKPVTLELGGKSPFIVCEDADVDQAVELAHFALFFNQGQCCCAGSRTFVHESIHD-EFVEKAKARCLSRVVGDPFRKGVEQGPQIDQEQFNKILRYIKAGKESGAKLVTGGDQIGTKGF-----YIMPTIFSEVQDDMA------IATDEIFGPVQSIIKFK--TLDEVIKRANASRYGLAAGVFTQNI

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
567	80		20		0.995493
584	80		20		0.995493
594	80		20		0.995493
662	80		20		0.995493
806		25		75	0.996473
992	75		25		0.996473
1080	80		20		0.995493
1124	88		11		0.923566

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain