SustainPineDB

Assembly Name: inia v1.0

UniGene Name: inia_v1.0_unigene4621

Length: 925 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene inia_v1.0_unigene4621 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6457	1/66
SustainPine v2.0	sp_v2.0_unigene40161	65/66

Source	Descriptions	Term	Type	Identity
AutoFact	Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9SSI9_RICCO	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	49%
Blast2go	gdsl esterase lipase	-	-	66%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S15	IPR000589	-	-
Sma3	Lipase, GDSL	IPR001087	-	-
Sma3	Transposon, En/Spm-like	IPR004242	-	-
Sma3	Lipase, GDSL, active site	IPR008265	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Intermediate filament protein, conserved site	IPR018039	-	-
Sma3	Beta-ketoacyl synthase, active site	IPR018201	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P062

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 19 aas, your sequence is shorter than subject: 258 - 363

Fln protein: LSTDFIAAALGLKETLPPYLDPHLTTQDLITGVSFASAGTGYDNLTAVVASVIPMWKQVEFFRDYSVILGERVGKKKASTIIREAIFLSCAGTNDFVNNYFLLPTRRRQFSITQYQDFLLQLSQNFIQDLYNLGARKFGIYGMAPPGCLPGQKMLYGNPKVEGCIDELNEAELVYNIKLKAAVASLKARVPDIKVVYIDIFDSFMDIVRNPAKYECLQIRLLGCRSLYRENLSPHRQNCARQIYLTITVMTILFGRW*

Protein Length: 259

Fln nts: TTGTCAACAGATTTCATTGCTGCAGCACTGGGGCTTAAGGAGACCCTGCCGCCATATTTAGATCCCCATCTCACTACCCAAGATCTCATAACAGGCGTCAGCTTTGCTTCTGCAGGAACTGGATACGATAATCTCACGGCCGTGGTCGCTTCTGTGATACCGATGTGGAAACAGGTGGAATTCTTTAGAGATTACAGTGTGATCTTGGGAGAGAGGGTTGGAAAGAAAAAGGCATCCACTATAATCCGAGAAGCCATATTCCTGTCCTGTGCAGGGACCAACGATTTTGTGAATAATTACTTTTTGCTGCCCACCAGAAGAAGGCAGTTCAGCATCACCCAATATCAGGACTTTCTGCTGCAACTCTCCCAAAACTTCATCCAGGATCTATACAATTTAGGTGCTCGCAAATTTGGCATCTATGGTATGGCACCTCCGGGATGCCTGCCTGGGCAAAAAATGCTTTATGGGAACCCCAAAGTGGAAGGTTGTATCGATGAATTGAACGAAGCTGAGCTGGTCTACAACATCAAACTGAAAGCAGCCGTAGCTAGTCTCAAAGCTAGGGTTCCAGATATTAAAGTGGTCTACATCGACATTTTCGATTCCTTCATGGATATAGTCAGAAATCCTGCCAAATATGAGTGCCTCCAAATACGTCTTCTGGGATGCCGTTCACTCTACAGAGAGAACTTATCGCCTCACCGCCAAAATTGTGCTCGACAAATATATCTCACAATTACTGTCATGACAATTTTATTTGGTCGGTGGTGA___AGAGATTAACTTCAAAATATGAGAGCAGTCGTTCAGATTTCGTTCATATCTATTTGTTTAGTGTGGTTCAAATTTCCATGCAGGTGTATTAATTTAATATTAATGTTGGTCTTTATTGATCGTCAAATTGAGACGATATTATCTTCGGATC

Fln Alignment:

mc_mira_c1554___LSTDFIAAALGLKETLPPYLDPHLTTQDLITGVSFASAGTGYDNLTAVVASVIPMWKQVEFFRDYSVILGERVGKKKASTIIREAIFLSCAGTNDFVNNYFLLPTRRRQFSITQYQDFLLQLSQNFIQDLYNLGARKFGIYGMAPPGCLPGQKMLYGNPKVE-GCIDELNEAELVYNIKLKAAVASLKARVPDIKVVYIDIFDSFMDIVRNPAKY
A9P062________________LTTDFLAEGLGIKETVPAYLDPGLTPEDLLTGVSFASAGTGYDNRTSKAFSVIPLWKEVQYFKEYGRKLGNIAGVEKATNILHEAIFIISIGSNDFLVNYYINPYTRLQYNVSQFQDHILQISSNFLEEIYNYGARRIIVSGLPPLGCLPIERTVRNVYKKERGCLKDLNEQAMIYNIKLQKMLDVIGDKLPGIKLAYSDIFSPLIDMVQNPAKY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain