SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: inia v1.0

UniGene Name: inia_v1.0_unigene3865

Length: 810 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene inia_v1.0_unigene3865 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10041	9/14
SustainPine v2.0	sp_v2.0_unigene30298	5/14

Source	Descriptions	Term	Type	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9R919_RICCO	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	cell division protein aaa atpase family	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Nucleoside-triphosphatase.	EC:3.6.1.15	-	0.0	75%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	75%
Blast2go	Thiamine metabolism	00730	75%
Blast2go	Metabolic pathways	01100	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	0.0	75%
Blast2go	ATP binding	GO:0005524	Molecular Function	0.0	75%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Carbonic anhydrase	IPR001765	-	-
Sma3		IPR001984	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	Adenosine/AMP deaminase active site	IPR006650	-	-
Sma3	Phospholipase-like, arabidopsis	IPR007942	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Carbonic anhydrase, prokaryotic-like, conserved site	IPR015892	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

SNPs (tot: 4)

Position	C %	G %	T %	Probability
623	33		66	0.997452
629	33		66	0.997452
632		33	66	0.997452
634	66		33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
627	644	CTT CTT CTT CTT CTT CTT	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain