SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: inia v1.0

UniGene Name: inia_v1.0_unigene3676

Length: 513 nt

UniGene Fasta

>inia_v1.0_unigene3676
TGACGTGTCCAATTTGTCTGGATACTGTTTTTATCCCGTAGCTTTAGGCTGTGGGCATATTTTCTGCAATAGTTGTGCTTGTGCTGCTGCTTCTGTCCCCATTATTGAAGATATCAAGACTGCAAAACCCTTTGCAAAGTGTCCCTTATGTAGACAGGCAGGAGTTTTTGCAGATTCTGTGCATCTAGCGGAATTGAATTTGCTTTTAAAGAAAAGGTGCAAAAGATATTGGAAAGAACGGTTATATGCAGAAGAAGGCAGAGAGAACGAAGCAAGAAAAAGATTATTGGTCTGTGCAGACTCACTTAGTCTTGGGATTTATGTAAAGACTACTCCACAAGAGTGCATCATGTTGATAGTTCTGTTTTGATCTCTCTAATAATACGTAGTGCTATTATATCATGGTTCTAATTCTGGGGTAATTACTTGTTTATTGATCTGCCTATTTGCTGCTAGTTTAATATTAGTATTATGCGGAGATGGATATTGTCTGGGTGTGCCCTATGTTAAGCG

Ace file of the UniGene inia_v1.0_unigene3676

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3364	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	putative E3 ubiquitin-protein ligase BAH1-like protein [Arabidopsis thaliana] sp\|Q8GW10.1\|BAH1L_ARATH RecName: Full=Probable E3 ubiquitin-protein ligase BAH1-like; AltName: Full=RING finger protein 178 dbj\|BAC43727.1\| unknown protein [Arabidopsis thaliana	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	protein	-	-	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	65%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 10	IPR001000	-	-
Sma3	Ribosomal protein S8e	IPR001047	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	SPX, N-terminal	IPR004331	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A8S4

Fln msg: your sequence is shorter than subject: 123 - 233

Fln protein: DVSNLSGYCFYPVALGCGHIFCNSCACAAASVPIIEDIKTAKPFAKCPLCRQAGVFADSVHLAELNLLLKKRCKRYWKERLYAEEGRENEARKRLLVCADSLSLGIYVKTTPQECIMLIVLF*

Protein Length: 124

Fln nts: TGACGTGTCCAATTTGTCTGGATACTGTTTTTATCCCGTAGCTTTAGGCTGTGGGCATATTTTCTGCAATAGTTGTGCTTGTGCTGCTGCTTCTGTCCCCATTATTGAAGATATCAAGACTGCAAAACCCTTTGCAAAGTGTCCCTTATGTAGACAGGCAGGAGTTTTTGCAGATTCTGTGCATCTAGCGGAATTGAATTTGCTTTTAAAGAAAAGGTGCAAAAGATATTGGAAAGAACGGTTATATGCAGAAGAAGGCAGAGAGAACGAAGCAAGAAAAAGATTATTGGTCTGTGCAGACTCACTTAGTCTTGGGATTTATGTAAAGACTACTCCACAAGAGTGCATCATGTTGATAGTTCTGTTTTGA___TCTCTCTAATAATACGTAGTGCTATTATATCATGGTTCTAATTCTGGGGTAATTACTTGTTTATTGATCTGCCTATTTGCTGCTAGTTTAATATTAGTATTATGCGGAGATGGATATTGTCTGGGTGTGCCCTATGTTAAGCG

Fln Alignment:

Contig3676___FYPVALGCGHIFCNSCACAAASVPIIEDIKTAKPFAKCPLCRQAGVFADSVHLAELNLLLKKRCKRYWKERLYAEEGRENEARKRL
D5A8S4________________FYPVALGCGHLFCNSCACAAASVPIDEGIKTAKPLAKCPICRQAGVFADSVHLAELNLLLKKRCKGYWKERLYAERMKQEKDYRSL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
290		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain