SustainPineDB

Assembly Name: inia v1.0

UniGene Name: inia_v1.0_unigene2956

Length: 1914 nt

UniGene Fasta

Ace file of the UniGene inia_v1.0_unigene2956

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8257	63/64

Source	Descriptions	Term	Type	Identity
AutoFact	Carboxy-terminal binding protein n=1 Tax=Larix gmelinii RepID=B3XZL7_9CONI	-	-	86%
FL-Next	tr=Carboxy-terminal binding protein; Larix gmelinii.	-	-	94%
Blast2go	c-terminal binding protein	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Glycerate dehydrogenase.	EC:1.1.1.29	-	0.0	77%

Source	KEGGs	Term	Identity
Blast2go	Glycine, serine and threonine metabolism	00260	77%
Blast2go	Glyoxylate and dicarboxylate metabolism	00630	77%
Blast2go	Methane metabolism	00680	77%
Blast2go	Metabolic pathways	01100	77%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	77%
Blast2go	regulation of cell shape	GO:0008360	Biological Process	77%
Blast2go	fruit morphogenesis	GO:0048530	Biological Process	77%
Blast2go	floral organ morphogenesis	GO:0048444	Biological Process	77%
Blast2go	leaf morphogenesis	GO:0009965	Biological Process	77%
Blast2go	monopolar cell growth	GO:0042814	Biological Process	77%
Blast2go	microtubule cytoskeleton organization	GO:0000226	Biological Process	77%
Blast2go	inductive cell-cell signaling	GO:0031129	Biological Process	77%
Blast2go	regulation of epidermal cell division	GO:0010482	Biological Process	77%
Blast2go	trichome branching	GO:0010091	Biological Process	77%
Blast2go	glycerate dehydrogenase activity	GO:0008465	Molecular Function	77%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	77%
Blast2go	cofactor binding	GO:0048037	Molecular Function	77%
Blast2go	regulation of trichome morphogenesis	GO:2000039	Biological Process	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding	IPR006140	-	0.0	-
Sma3	NAD(P)-binding domain	IPR016040	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B3XZL7

Fln msg: your sequence is shorter than subject: 586 - 646

Fln protein: CASSFPRLSPRAAQRRLQPWQLILCLGSSDKAVDSALATDLGLQLLHVDTARAEEVADTVMALLLGLIRHTHLLSKQGFSSSGWLGSLQPLCRGMRRCHGLVLGIIGRSASACALATRSLAFKIRVLYYDCEEVNKGKAVRGRRSFPPAAKQMDTLNDLLSASDLVSLHCAVTNETLQILNLETLQHIKPGAFIVNTSSSHLLDDCALKQLLIDGTVAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIREKAVSILHSFFLDGVIPSNAVSDEEEDLKEAASQEEKSEKQDKDKLIGARDGEQLGDESQTSPEFRQQQAYYQSQEQRLQSQDSGISQNSGGQREVRHGRSGKKGKKRPGRRKSQQKSDSTVLLERENNCVALQRDDNGASVSGRDQVVSSSSRFASPEDSRHKRGGDVGSTVDTASEKQAVTSKGPYGQTGDLLKDGLVISLRAKDRPGYHVSRQRGPGGGWFLDTMSNVTKRDPAAQFLVVFRSKDRIGLRSLAAGGKLLQVNRRMELAFASHNFDAWENWILEGSTLEECRLINSRIPMVALDVSIEILAAVSEEDGIARWLS*

Protein Length: 587

Fln nts: GCTGTGCTTCTTCATTCCCTCGCTTATCTCCCCGGGCTGCTCAGAGGAGGCTTCAGCCATGGCAACTGATCCTCTGCCTCGGGTCGTCCGACAAGGCCGTCGATTCCGCCCTCGCCACGGATCTAGGGTTGCAGCTCCTCCATGTCGACACAGCCAGGGCCGAGGAGGTGGCCGATACTGTCATGGCCTTGTTGCTCGGACTGATCCGTCACACGCACTTGCTGTCGAAACAGGGCTTTTCCAGTTCCGGTTGGCTTGGATCGCTCCAGCCCCTCTGCCGGGGTATGCGCCGCTGCCACGGTCTCGTGCTTGGGATAATCGGTCGATCGGCCTCGGCCTGCGCTCTGGCCACCAGGAGCCTGGCGTTTAAGATTAGAGTCCTCTACTACGATTGCGAAGAGGTTAATAAGGGAAAAGCTGTGAGAGGGCGCAGATCTTTCCCCCCAGCTGCCAAACAGATGGATACTCTTAATGATTTGCTTTCTGCAAGTGACCTTGTATCGCTCCACTGTGCTGTGACAAATGAAACACTACAGATTCTCAATCTTGAAACTTTGCAACACATAAAGCCAGGGGCTTTTATTGTGAATACCAGCAGTAGCCACTTATTGGATGATTGTGCCCTAAAACAACTTTTAATAGATGGAACTGTGGCGGGATGTGCGCTGGATGGTGCAGAAGGTCCTCAGTGGATGGAAGCATGGGTAAGAGAAATGCCAAATGTGCTGATTCTTCCACGCAGTGCTGATTACAGTGAAGAGGTATGGATGGAAATACGTGAGAAGGCTGTGTCAATATTGCACTCTTTCTTCCTTGATGGTGTGATTCCTAGCAATGCAGTTTCTGATGAAGAGGAGGATTTAAAAGAAGCTGCATCCCAAGAAGAGAAATCAGAGAAACAGGATAAAGATAAACTTATAGGTGCTCGTGATGGAGAACAACTGGGTGATGAAAGTCAAACGAGTCCAGAATTTCGGCAGCAACAGGCTTATTATCAATCACAGGAGCAGCGCTTGCAATCTCAGGATTCTGGTATTTCACAGAACTCTGGAGGTCAACGTGAAGTGAGACATGGTAGATCAGGAAAGAAAGGCAAAAAGAGGCCTGGACGACGCAAATCACAGCAAAAGTCAGATTCTACTGTTTTACTAGAACGGGAAAATAATTGTGTAGCTTTGCAACGAGATGACAATGGTGCTAGTGTAAGTGGAAGAGACCAAGTTGTTAGTTCAAGTTCACGGTTTGCTTCACCTGAGGATTCAAGGCATAAACGTGGAGGTGATGTTGGGTCAACAGTTGACACAGCATCTGAGAAACAGGCAGTAACTAGTAAAGGACCTTATGGTCAAACTGGTGACCTGCTAAAAGATGGGCTTGTTATATCTTTGCGTGCAAAAGACCGCCCTGGATACCATGTATCCAGACAGCGAGGTCCTGGTGGTGGTTGGTTTCTAGACACCATGTCTAATGTGACGAAAAGAGATCCAGCTGCACAATTTCTTGTTGTTTTCCGAAGCAAGGATCGGATTGGTTTGCGTTCCCTTGCAGCTGGAGGCAAGTTGTTGCAGGTAAATAGAAGAATGGAGCTTGCATTTGCAAGTCACAATTTTGATGCATGGGAGAATTGGATTTTGGAAGGCTCAACATTGGAGGAATGCAGGCTAATAAATAGTAGAATTCCCATGGTGGCATTGGATGTGTCTATCGAGATCCTGGCTGCTGTAAGTGAAGAAGATGGTATTGCTCGATGGCTCAGCTGA___TGAATCACCCTTGTTTGAATGCATGATTTTCTGTATTGTTATTGGCTCTATTTAATGATGCCTGTGGATTATTGTAGATTATACGGTTTGTGATAACCAGACAGAGGCCTTTCTGGTCTGTTAAAAAGCCATTGTATAATAATTTTCATTTGGT

Fln Alignment:

Contig2956___PRAAQRRLQPWQLILCLGSSDKAVDSALATDLGLQLLHVDTARAEEVADTVMAXXXXXXXXXXXXSKQGFSSSGWLGSLQPLCRGMRRCHGLVLGIIGRSASACALATRSLAFKIRVLYYDCEEVNKGKAVRGRRSFPPAAKQMDTLNDLLSASDLVSLHCAVTNETLQILNLETLQHIKPGAFIVNTSSSHLLDDCALKQLLIDGTVAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIREKAVSILHSFFLDGVIPSNAVSDEEEDLXXXXXXXXXXXXXXXXXLIGARDGEQLGDESQTSPEFXXXXXXXXXXXXXXXSQDSGISQNSGGQREVRHXXXXXXXXXXXXXXXXXXXXDSTVLLERENNCVALQRDDNGASVSGRDQVVSSSSRFASPEDSRHKRGGDVGSTVDTASEKQAVTSKGPYGQTGDLLKDGLVISLRAKDRPGYHVSRQRGPGGGWFLDTMSNVTKRDPAAQFLVVFRSKDRIGLRSLAAGGKLLQVNRRMELAFASHNFDAWENWILEGSTLEECRLINSRIPMVALDVSIEILAAVSEEDGIARWLS
B3XZL7________________PRAAQRRLQPWQLILCLGSSDKAVDSALASDLGLQLLHVDTARAEEVADTVMALLLGLIRHTHLLSKQGFSSSGWLGSLQPLCRGMRRCHGLVLGIIGRSASACALATRSLAFKMRVLYYDCEEV-KGKAVRGRRSFPPAAKQMDTLNDLLSASDLVSLHCAVTNETLQILNPETLQHIKPGAFIVNTSSSHLLDDCALKQLLIDGTVAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIREKAVSILHSFFLDGVIPSNAVSGEEEDLKEATSQEEKQDKEK---LICARDGEQLGDESQTSPEFRQKQAYYQSQEQRLQSQDSSISQQSGGQREVRHGRSGKKGRKRPGRRKSQQKSDSVVLLERENNCVALQRDDNGASVSGRDPVVSSSSRFASPEDSRHRRGGDVGSTVDTASEKQSVTSKGPYGQTGDLLKDGLVISLRAKDRAGYHVSRQRGPGGGWVLDTMSNVTKRDPAAQFLVVFRSKERIGLRSLAAGGKLLQVNRKMEVAFASHNFDAWENWILEGSTLEECRLINTRSPSVALDVSIEILAAVGEEDGIARWLS

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
979			88	11	0.923564
983		88		11	0.923564
1086	10		90		0.90298
1130	90			10	0.90298
1131	90		10		0.90298
1146		12		87	0.992554
1236	14		85		0.993533
1265	83		16		0.994512
1438	16			83	0.994512
1459		66		33	1.0
1769	88		11		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain