SustainPineDB

Assembly Name: inia v1.0

UniGene Name: inia_v1.0_unigene2620

Length: 1511 nt

UniGene Fasta

Ace file of the UniGene inia_v1.0_unigene2620

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13902	47/47

Source	Descriptions	Term	Type	e value	Identity
AutoFact	B-box type zinc finger-containing protein [Arabidopsis thaliana] gb\|AAS77483.1\| At5g54470 [Arabidopsis thaliana] dbj\|BAD94801.1\| putative protein [Arabidopsis thaliana] gb\|AED96499.1\| B-box type zinc finger-containing protein [Arabidopsis thaliana]	-	-	2.0e-15	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Blast2go	protein	-	-	0.0	56%

Source	GOs	Term	Type	Identity
Blast2go	response to cold	GO:0009409	Biological Process	56%
Blast2go	response to chitin	GO:0010200	Biological Process	56%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	56%
Blast2go	intracellular	GO:0005622	Cellular Component	56%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, B-box	IPR000315	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AEG0

Fln msg: Overlapping hits, possible frame ERROR between 964 and 865, your sequence is shorter than subject: 310 - 328

Fln protein: MGKGKEPKCELCCNDAALHCEADSASLCYKCDANVHGVNFLVARHVRVVLCSGCYHHTERNVSGPTPNADQSFCCACCKSQDIEQTSLCNSTAESAFAGPLSAVSSEHGKGLDVGIDCSLFHGSRFGEGNLKTCSREGDNQRTGATERSEVSINAWSYNDGVSTTSSLGNSQTVDNKPQVESHNKKTGLLHRRSGPRVLNAEMKVEIVLRKWFRHLNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSFWLAATLSEKQNHLPAVKRLEECSGIPSKLILLAESRLGRILRLKMQEEGSAECSS*

Protein Length: 311

Fln nts: TCCATTCCTTACTTCGATTCTCTGCCTATTTTGATCCAGTCCAGCTCCAGCTCCAGCTGTAAGTTGGGTGTTTCAGTTTGGATTTCCTGTGAGAATTTTAGCTCGAGCAAGAAATTGGGTGTTTAGTTTGGATTTCCTGTGAGAATTAGTAGTGGGAAATTGTGCCTGAGGAGTAGGAGTTGGAGTTGTGTTGTGGGGAAATAATTTGGTG_-_ATGGGGAAAGGGAAGGAACCCAAGTGTGAGCTTTGCTGCAACGATGCAGCATTGCACTGCGAAGCAGATTCTGCAAGTCTGTGTTACAAATGCGATGCTAATGTCCATGGAGTTAATTTCTTGGTGGCAAGACATGTTAGGGTTGTTTTGTGCTCCGGATGTTATCATCACACTGAAAGAAATGTGTCTGGGCCGACCCCAAATGCTGATCAGTCCTTTTGCTGTGCCTGTTGCAAGTCACAGGACATCGAACAGACCTCTCTCTGTAATTCCACAGCAGAATCTGCCTTTGCTGGGCCTCTTTCTGCTGTATCTTCTGAGCATGGTAAGGGACTTGATGTGGGTATTGATTGTAGCCTTTTCCATGGTTCCAGATTTGGAGAAGGAAACCTGAAGACTTGTTCCAGGGAAGGGGATAATCAGAGGACTGGGGCTACTGAGAGGTCTGAGGTTTCTATCAATGCCTGGTCTTACAATGATGGGGTAAGCACTACCAGCAGCTTGGGTAATAGCCAGACAGTTGACAACAAACCCCAAGTGGAAAGCCACAACAAAAAAACGGGCTTACTCCATAGAAGATCCGGACCGCGCGTGTTGAATGCAGAGATGAAAGTGGAAATAGTTTTGAGAAAATGGTTCAGACATCTGAATxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTCCTTCTGGTTAGCTGCAACACTTAGTGAAAAGCAAAACCATTTGCCAGCCGTGAAAAGGCTTGAGGAGTGCTCTGGAATACCATCTAAATTGATACTTTTGGCTGAATCCAGACTGGGAAGGATTCTCAGGTTGAAGATGCAGGAGGAAGGTTCGGCAGAGTGCTCTAGTTGA___GGGCTTCTTCTTGTTTTCCTTCACAACTTTTGAAAGATCTCTTGATCTCGGGTTTACGTTGTGGGAAAAGCCAACAAACACAATATTCTTGTTTGCAGCTGGTGTGATCTACCAGAGGCTTACAAGAGAGGTAGGACATGTCTCTAGGGATAAGAACCTTGGTGGGAGGAGGGGTATTTCACGCCTCTGTTTCTTTTGTGTAGCCAAGGTCCCTTTGACACTGCTCTACAATATTATCAAGACAAGCTCGTTGTATGAAACACATGTATAAATATAGGTAGCTAGGATGGATGCCATTTGTTGCAGCATATGGTATAGAAGATTTAGTTGAGATTCAGAATGATTTGTTTGTAGTCTTCTAACCAGTAGTA

Fln Alignment:

Contig2620___KEPKCELCCNDAALHCEADSASLCYKCDANVHGVNFLVARHVRVVLCSGCYHHTERNVSGPTPNADQSFCCACCKSQDIEQTSLCNSTAESAFAGPLSAVSSEHGKGLDVGIDCSLFHGSRF-GEGNLKTCSREGDNQRTG------------------ATERSEVSINAWSYNDGVSTTSSLGNSQTVDNKPQVESHNKKTGLLHRRSGPRVLNAEMKVEIVLRKWFRHLNLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAATLSEKQNHLPAVKRLEECSGIPSKLILLAESRLGRILRLKMQEEGSAECSS
D5AEG0________________KKPKCELCSNEAALHCEADSANLCFKCDANVHGVNFLVARHVRVVLCCRCHQYTEINVSGPSPHAGQSFCCACCKSQGLKQTSLCNSTAESAFPGSVSAASSNHSKGLDVGIGCSLVNVPRIVGEGNMKACSREGDNEGTGTAERSEVSIKEGDNERTWATERSEVSINGWSYNDGVSTTSSSANSQTVDDKPQVESHKKEMGLLHRRSGPGMLSAEMKVEMVLRKWCRYLNLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAATLSLKKAHLPPVKKLEECSGIPSKLILLAEFRLGRILRLKMQEEGSAECSS

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
103		84		15	0.999986
164		16		83	0.999991
667		88		11	0.923564
725		83		16	0.994512
986		25		75	0.996473
1168	80		20		0.995493
1204		22		77	0.999999

SSRs (tot: 1)

Start position	End position	Sequence	Length
40	58	TCCAGC TCCAGC TCCAGC T	19

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain