SustainPineDB

Assembly Name: inia v1.0

UniGene Name: inia_v1.0_unigene1827

Length: 1956 nt

UniGene Fasta

>inia_v1.0_unigene1827
GAACCGTCAGGGCGGAGGAAAAGCCCAGCAGCTTCCGCGGGTCCTGGGTTCGATTCCTGCGGACTGCCTAATAAATGCAGTAGACATCTCGCGGGCACGTCTGAGGCAGCTGAGGTTTATTTGCACAGGATCCATGGCGGAGCCAGGGGGAGACGACTCCAAAACCTCTGAAAATCAACCCTCCATTGATACGGAACCCATGGAAATCCATGGAGAAGTTTCTTCGGTCGAAACCCCAATGGACGACGGTCTCCTAGGGAAATGTTCTGAGAACTCCAACGCGAGCACAGAGGCGTCGTCGTCCTCTTCGTCGGCTGCTCTTGAAAAAAGTTTGTTGTCGTATTCGTCTTCGTCTTCGTCGGCTCTTTTTGAGAAAAGCTCGTCGTCGAGCAAGCTTAACGCCGAAGCTCCCGTGTTTGTTCCCAGAGCGCAAGCTGCCGTTCACGTCGGAGGACCGATTTTGCCAGGCTTTACTGAACGTCCACTGCCAGAGCAGTTTTTTGAGCAGGAGGTCTTGGCGTCCGAGGCGGAGAGTGCGGCTGGCCCCATTCATTCCTCAAAGGCCGTCCTCACCGAGGAATTGAAACAAAAGGTCGTTCAGCAGGTTGAGTTCTATTTTAGTGATTCAAATCTGCCCACTGACAAATATTTGATGAAGTTTGTGAAGAAGGATCCAGAAGGATTTGTTCCTATTCCGGTTGTGGCATCTTTCAGGAAAGTAAAAAGCCTTGTTAGCAATCATTCTTTGGTGGCAGCTGCATTGAGGACATCTTCACAACTGGTTGTTAGTGAAGATGGGAAGAAAGTGAGGAGACTTCACCCGTTGACAGATATTGACATCGAGGAGGTGCAGTCCCGCACTGTTGTTGCAGAAAATCTGCCCAGTGATTATTCTATCCAAAATCTGGAGAAACTTTTTGGTGCTGTTGGCAGTGTAAAACTTGTGCGTGTTTTCCAACCTCAAAGGTATGATTCGGGCCAAGTTTCAATGAAGGCCCACAGGAATGATATGTTTGTCAGCAGCAAGCTGCACGCACTTGTGGAGTATGAGACTGTTGAACAAGCTGAGAAAGCTGTTGCTGATCTAAATGATGGAGGAAACTGGAGAAGTGGCCTTCGAGTGCAACTGCTTTTAAAGCGGATGGGTAAGTATGGACACCCAACAAAAGGACGGCAATTGGATAATGCTGATGGACATGGACATGGTGAAGAGGAAGATGTGAACAACACATCTGACACAGGAAATGATAAACAATCGAAAGTTACTGCACAACATTCAGACCGACATGATGAGTTAGAGGGAGACGCACATCACCAAAATGAAAGAAATGGAGGAAGAAAAGGCAGGGGAAGGGGACGAGGGAAGCCTCGTGGCCGTGGGCAGTATCATGGTAATGGGCGTGGCCATCCAGTTGGCTTAGCATCAACTAGCAGTTCTAGTAGCGGTGAAGTTGTGGTCAAGCAACCTCCAGGACCAAGAATGCCAGATGGAACCCGGGGCTTTACCATGGGTCGTGGTAGACCACTCGCTGACAGTAATGTTTAGAACCATTTTTCGTAGATGAGCTTTTGGGGCATGGAAATCTGTGATTTCTCTACTGTGAACTGTTTTTATTGTTTGCACCTTAGAGATGCTACTGAGTTTTCCAGTTTACAGCTCATCATTGTTTTGTTCTTATTTAATCGAAGATACTATTTTGATAGAGGCTTTGTTGGTGGGGCTATCTAGTTGTCTCCTCTTTCAAAGAGGAGGCTTCTTAGCAGAAAGAATATTGTACAAATGTAATTGGTTTTGGTTTTGGTCTGGAAAGCATCAGAAGGCGGACTGGAATTCTCTAATTACAGTAAAAATACAAATGAATGATATAGTTGTGTAATATGTCTTAAACCATTTTGTAATTACTCGAGATTTTCTTGAGACATCCTTTAAGCTTTAATCCGTATAAGCTTACTCGT

Ace file of the UniGene inia_v1.0_unigene1827

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21253	104/104

Source	Descriptions	Term	Type	Identity
AutoFact	Lupus la ribonucleoprotein, putative n=1 Tax=Ricinus communis RepID=B9SSZ3_RICCO	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	lupus la	-	-	67%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Lupus La protein	IPR002344	-	-
Sma3	RNA-binding protein Lupus La	IPR006630	-	-
Sma3	Ataxin-2, C-terminal	IPR009818	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9L9

Fln msg:

Fln protein: MAEPGGDDSKTSENQPSIDTEPMEIHGEVSSVETPMDDGLLGKCSENSNASTEASSSSSSAALEKSLLSYSSSSSSALFEKSSSSSKLNAEAPVFVPRAQAAVHVGGPILPGFTERPLPEQFFEQEVLASEAESAAGPIHSSKAVLTEELKQKVVQQVEFYFSDSNLPTDKYLMKFVKKDPEGFVPIPVVASFRKVKSLVSNHSLVAAALRTSSQLVVSEDGKKVRRLHPLTDIDIEEVQSRTVVAENLPSDYSIQNLEKLFGAVGSVKLVRVFQPQRYDSGQVSMKAHRNDMFVSSKLHALVEYETVEQAEKAVADLNDGGNWRSGLRVQLLLKRMGKYGHPTKGRQLDNADGHGHGEEEDVNNTSDTGNDKQSKVTAQHSDRHDELEGDAHHQNERNGGRKGRGRGRGKPRGRGQYHGNGRGHPVGLASTSSSSSGEVVVKQPPGPRMPDGTRGFTMGRGRPLADSNV*

Protein Length: 472

Fln nts: GAACCGTCAGGGCGGAGGAAAAGCCCAGCAGCTTCCGCGGGTCCTGGGTTCGATTCCTGCGGACTGCCTAATAAATGCAGTAGACATCTCGCGGGCACGTCTGAGGCAGCTGAGGTTTATTTGCACAGGATCC_-_ATGGCGGAGCCAGGGGGAGACGACTCCAAAACCTCTGAAAATCAACCCTCCATTGATACGGAACCCATGGAAATCCATGGAGAAGTTTCTTCGGTCGAAACCCCAATGGACGACGGTCTCCTAGGGAAATGTTCTGAGAACTCCAACGCGAGCACAGAGGCGTCGTCGTCCTCTTCGTCGGCTGCTCTTGAAAAAAGTTTGTTGTCGTATTCGTCTTCGTCTTCGTCGGCTCTTTTTGAGAAAAGCTCGTCGTCGAGCAAGCTTAACGCCGAAGCTCCCGTGTTTGTTCCCAGAGCGCAAGCTGCCGTTCACGTCGGAGGACCGATTTTGCCAGGCTTTACTGAACGTCCACTGCCAGAGCAGTTTTTTGAGCAGGAGGTCTTGGCGTCCGAGGCGGAGAGTGCGGCTGGCCCCATTCATTCCTCAAAGGCCGTCCTCACCGAGGAATTGAAACAAAAGGTCGTTCAGCAGGTTGAGTTCTATTTTAGTGATTCAAATCTGCCCACTGACAAATATTTGATGAAGTTTGTGAAGAAGGATCCAGAAGGATTTGTTCCTATTCCGGTTGTGGCATCTTTCAGGAAAGTAAAAAGCCTTGTTAGCAATCATTCTTTGGTGGCAGCTGCATTGAGGACATCTTCACAACTGGTTGTTAGTGAAGATGGGAAGAAAGTGAGGAGACTTCACCCGTTGACAGATATTGACATCGAGGAGGTGCAGTCCCGCACTGTTGTTGCAGAAAATCTGCCCAGTGATTATTCTATCCAAAATCTGGAGAAACTTTTTGGTGCTGTTGGCAGTGTAAAACTTGTGCGTGTTTTCCAACCTCAAAGGTATGATTCGGGCCAAGTTTCAATGAAGGCCCACAGGAATGATATGTTTGTCAGCAGCAAGCTGCACGCACTTGTGGAGTATGAGACTGTTGAACAAGCTGAGAAAGCTGTTGCTGATCTAAATGATGGAGGAAACTGGAGAAGTGGCCTTCGAGTGCAACTGCTTTTAAAGCGGATGGGTAAGTATGGACACCCAACAAAAGGACGGCAATTGGATAATGCTGATGGACATGGACATGGTGAAGAGGAAGATGTGAACAACACATCTGACACAGGAAATGATAAACAATCGAAAGTTACTGCACAACATTCAGACCGACATGATGAGTTAGAGGGAGACGCACATCACCAAAATGAAAGAAATGGAGGAAGAAAAGGCAGGGGAAGGGGACGAGGGAAGCCTCGTGGCCGTGGGCAGTATCATGGTAATGGGCGTGGCCATCCAGTTGGCTTAGCATCAACTAGCAGTTCTAGTAGCGGTGAAGTTGTGGTCAAGCAACCTCCAGGACCAAGAATGCCAGATGGAACCCGGGGCTTTACCATGGGTCGTGGTAGACCACTCGCTGACAGTAATGTTTAG___AACCATTTTTCGTAGATGAGCTTTTGGGGCATGGAAATCTGTGATTTCTCTACTGTGAACTGTTTTTATTGTTTGCACCTTAGAGATGCTACTGAGTTTTCCAGTTTACAGCTCATCATTGTTTTGTTCTTATTTAATCGAAGATACTATTTTGATAGAGGCTTTGTTGGTGGGGCTATCTAGTTGTCTCCTCTTTCAAAGAGGAGGCTTCTTAGCAGAAAGAATATTGTACAAATGTAATTGGTTTTGGTTTTGGTCTGGAAAGCATCAGAAGGCGGACTGGAATTCTCTAATTACAGTAAAAATACAAATGAATGATATAGTTGTGTAATATGTCTTAAACCATTTTGTAATTACTCGAGATTTTCTTGAGACATCCTTTAAGCTTTAATCCGTATAAGCTTACTCGT

Fln Alignment:

Contig1827___MAEPGGDDSKTSENQPSIDTEPMEIHGEVSSVETPMDDGLLGKCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVFVPRAQAAVHVGGPILPGFTERPLPEQFFEQEVLASEAESAAGPIH--SSKAVLTEELKQKVVQQVEFYFSDSNLPTDKYLMKFVKKDPEGFVPIPVVASFRKVKSLVSNHSLVAAALRTSSQLVVSEDGKKVRRLHPLTDIDIEEVQSRTVVAENLPSDYSIQNLEKLFGAVGSVKLVRVFQPQRYDSGQVSMKAHRNDMFVSSKLHALVEYETVEQAEKAVADLNDGGNWRSGLRVQLLLKRMGKYGHPTKGRQLDNADGHGHGEEEDVNNTSDTGNDKQSKVTAQHSDRHDELEGDAHHQNEXXXXXXXXXXXXXXXXXXXQYHGNGRGHPVGLAXXXXXXXGEVVVKQPPGPRMPDGTRGFTMGRGRPLADSNV
D5A9L9________________MAEPVRDDSKTSENQPSVDTEPMEIHGEISSVETPVDDGLKSS-----ENLNASAEASVSSSAALEKSSLSYSSSSALLEKNSSSSKLNAQAPVFVPRAQVAVHVGGLIPSSFTEHSLPEQFIEQEVVGSEPESAATPTPTPSSKAVLTEELRQKVVKQVEFYFSDANLPTDKYLMKFVKKDPEGFVPIPFLANFRKVKNLVSNHSLVAAALRTSSQLVVSEDGKKVRRLHPLADTDIEEVQSRTVVAENLPNDYSIQNLEKRFGAVGNVKLVRVFQPQRYDSGQVSMKAHRNDMFVSSKLHALVEYETVEQAEKAVADLNDGGNWRSGLQVQLLLKRMGKYGHQTKGRQSDNAD--VHGEEEDANNTSDTGNDKQSKVTTQHSDRHDDFEGDAHYPNEKNGGRKGRGRGRGKPRGRGQYHGNGRGHPLNTASTSSSSSGEVVVKQPPGPRMPDGTRGFTMGRGRPLADSNV

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1548	50		50		1.0
1697		14		85	0.993533
1800			14	85	0.993533
1880		13		86	0.999973

SSRs (tot: 1)

Start position	End position	Sequence	Length
343	360	TTCGTC TTCGTC TTCGTC	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain