SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: inia v1.0

UniGene Name: inia_v1.0_unigene1669

Length: 980 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene inia_v1.0_unigene1669 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16630	70/70

Source	Descriptions	Term	Type	e value	Identity
AutoFact	brassinosteroid-responsive RING-H2 [Arabidopsis thaliana] ref\|XP_002878382.1\| brassinosteroid-responsive ring-H2 [Arabidopsis lyrata subsp. lyrata] gb\|AAD27870.1\|AF134155_1 BRH1 RING finger protein [Arabidopsis thaliana] emb\|CAB71076.1\| RING finger protei	-	-	6.0e-35	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%
Blast2go	e3 ubiquitin-protein ligase rha1b-like	-	-	0.0	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to chitin	GO:0010200	Biological Process	0.0	64%
Blast2go	response to brassinosteroid stimulus	GO:0009741	Biological Process	0.0	64%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	2Fe-2S ferredoxin, iron-sulphur binding site	IPR006058	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	C %	T %	Probability
200	12	87	0.992554
237	11	88	0.923564
490	88	11	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain