SustainPineDB

Assembly Name: inia v1.0

UniGene Name: inia_v1.0_unigene1503

Length: 973 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene inia_v1.0_unigene1503 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2461	75/75

Source	Descriptions	Term	Type	Identity
AutoFact	putative LRR receptor-like serine/threonine-protein kinase RKF3 [Arabidopsis thaliana] sp\|P93050.1\|RKF3_ARATH RecName: Full=Probable LRR receptor-like serine/threonine-protein kinase RKF3; AltName: Full=Receptor-like kinase in flowers 3; Flags: Precursor	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	probable lrr receptor-like serine threonine-protein kinase rkf3-like	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	82%
Blast2go	protein binding	GO:0005515	Molecular Function	82%
Blast2go	receptor signaling protein serine/threonine kinase activity	GO:0004702	Molecular Function	82%
Blast2go	ATP binding	GO:0005524	Molecular Function	82%
Blast2go	plasma membrane	GO:0005886	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Zinc finger, CCCH-type	IPR000571	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Alpha-isopropylmalate/homocitrate synthase, conserved site	IPR002034	-	-
Sma3	Transcription factor, MADS-box	IPR002100	-	-
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Glycoprotein D/GG/GX, Herpesvirus	IPR002896	-	-
Sma3	Gnk2-homologous domain	IPR002902	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-
Sma3	Beta-ketoacyl synthase, active site	IPR018201	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPC1

Fln msg: your sequence is shorter than subject: 253 - 611

Fln protein: VCEFVPNWSLHDHLFDHRRSERRLNWPIRCQIAIGTARGLAYLHHEIQPAIIHRDIKASNILLDENFNARVADFGLAKFSPEGVSHLSTRVAGTLGYVAPEYALYGQLTEKSDVYSFGVVLLELLSGRKALITNAQSHSLHITDWAWSLVRTGNTLEVIEQGMENPGPAEVMERYVLIALICAHPQMFCRPSMDQVLKMMESDLPVPHIPDRPIPLIAELVDIERSAVSSGSGQFSSPSGFQSFSSEMGLAR*

Protein Length: 254

Fln nts: AGTTTGTGAATTCGTTCCCAATTGGAGTCTACACGATCATCTCTTTGACCATCGTCGGTCGGAAAGGAGATTGAATTGGCCCATTCGCTGTCAGATTGCTATTGGAACGGCGAGGGGATTGGCTTACCTGCACCACGAAATACAACCGGCAATAATTCACAGGGACATCAAGGCCAGCAACATTCTTCTGGACGAAAATTTCAATGCCCGGGTGGCTGATTTTGGGTTGGCAAAGTTTTCTCCGGAAGGAGTTTCTCATCTGAGTACCAGAGTGGCTGGGACACTTGGGTATGTTGCACCCGAGTATGCGTTGTATGGACAGCTGACAGAGAAAAGTGATGTTTATAGTTTTGGAGTTGTGCTTCTGGAGCTTCTTAGTGGTAGAAAGGCTCTTATAACGAATGCGCAATCCCACTCGCTGCACATCACTGACTGGGCCTGGTCTCTTGTGAGAACAGGGAACACTTTGGAAGTAATAGAACAGGGAATGGAGAATCCGGGACCTGCTGAAGTAATGGAAAGGTATGTCTTGATTGCTTTGATATGCGCTCACCCACAGATGTTTTGTAGGCCGAGTATGGATCAAGTGTTGAAGATGATGGAGAGTGATCTTCCTGTGCCACATATTCCGGATCGCCCCATTCCCCTTATAGCAGAATTGGTAGATATTGAAAGATCTGCTGTTAGTAGTGGCTCAGGGCAGTTTTCGAGTCCTTCAGGATTCCAATCTTTCAGCTCAGAAATGGGTCTTGCCCGCTGA___GATTGTCTAGAAATTTCTTCTTATATTGCTTTTTAGCCAGACCTGAAGAGTGGACATGTATTAGAGGCTTAAACTTGATATCAAAGCTCCATTCTGTGAGCAGCGTGGTTTTCTGGGTGCTGAGGTATCACAGACTGCCCGACTTTTACCATTCGTAATTCAGTTAGTGGGTAAAACTCTTTTCTATTCCATTGGCCCTATTTGATACCTTGG

Fln Alignment:

Contig1503___VCEFVPNWSLHDHLFDHRRSERRLNWPIRCQIAIGTARGLAYLHHEIQPAIIHRDIKASNILLDENFNARVADFGLAKFSPEGVSHLSTRVAGTLGYVAPEYALYGQLTEKSDVYSFGVVLLELLSGRKALITNAQSHSLHITDWAWSLVRTGNTLEVIEQGMENPGPAEVMERYVLIALICAHPQMFCRPSMDQVLKMMESDLPVPHIPDRPIPLIAELVDIERSAVXXXXXXXXXXXXXXXXXSEMGLAR
B8LPC1________________VCEFIPNRSLHDNLFDHRRSERRLDWPTRCQIAVGMARGLAYLHHEIQPGIIHRDIKASNILLDENFNARVADFGLAKFAPEGVSHLSTRVAGTLGYVAPEYALYGQLTEKSDVYSFGVVLLELLSGRKALLTAAQSQSLHITDWAWSLVRRGSTLEVIEQGIENPGPPEVMERYVMIALICAHPQLFCRPSMDQALKMMENDLPVPHIPDRPIPFIADLVDIERSAGSSGSGQFSSPSGFQSFSSEMSLAR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain